woldlab.caltech.edu Git - erange.git/tree

-rw-r--r--	10370	MakeBamFromRds.py	blob \| history \| raw
-rw-r--r--	13809	MakeRdsFromBam.py	blob \| history \| raw
-rw-r--r--	664	Peak.py	blob \| history \| raw
-rw-r--r--	44762	ReadDataset.py	blob \| history \| raw
-rw-r--r--	2220	Region.py	blob \| history \| raw
-rw-r--r--	0	__init__.py	blob \| history \| raw
-rwxr-xr-x	5246	altSpliceCounts.py	blob \| history \| raw
-rwxr-xr-x	2844	analyzego.py	blob \| history \| raw
-rwxr-xr-x	801	bedtoregion.py	blob \| history \| raw
-rwxr-xr-x	992	binstocdf.py	blob \| history \| raw
-rwxr-xr-x	3425	buildMatrix.py	blob \| history \| raw
-rwxr-xr-x	1572	buildrmaskdb.py	blob \| history \| raw
-rwxr-xr-x	2764	buildsnpdb.py	blob \| history \| raw
-rwxr-xr-x	729	cdfdist.py	blob \| history \| raw
-rwxr-xr-x	7012	checkrmask.py	blob \| history \| raw
drwxr-xr-x	-	chiapet	tree \| history
-rwxr-xr-x	3641	chkSNPrmask.py	blob \| history \| raw
-rwxr-xr-x	5076	chksnp.py	blob \| history \| raw
drwxr-xr-x	-	cistematic	tree \| history
-rwxr-xr-x	802	colsum.py	blob \| history \| raw
-rwxr-xr-x	2500	combineRPKMs.py	blob \| history \| raw
-rwxr-xr-x	3591	combinerds.py	blob \| history \| raw
-rwxr-xr-x	28820	commoncode.py	blob \| history \| raw
-rwxr-xr-x	854	crossmatch.py	blob \| history \| raw
-rwxr-xr-x	5713	distalPairs.py	blob \| history \| raw
drwxr-xr-x	-	docs	tree \| history
-rw-r--r--	6288	farPairs.py	blob \| history \| raw
-rwxr-xr-x	1861	featureIntersects.py	blob \| history \| raw
-rwxr-xr-x	4278	findMotifs.py	blob \| history \| raw
-rwxr-xr-x	32898	findall.py	blob \| history \| raw
-rwxr-xr-x	948	fraction.py	blob \| history \| raw
-rwxr-xr-x	4314	geneDownstreamBins.py	blob \| history \| raw
-rwxr-xr-x	6030	geneLocusBins.py	blob \| history \| raw
-rwxr-xr-x	5954	geneLocusCounts.py	blob \| history \| raw
-rwxr-xr-x	4223	geneLocusPeaks.py	blob \| history \| raw
-rwxr-xr-x	7900	geneMrnaCounts.py	blob \| history \| raw
-rwxr-xr-x	9289	geneMrnaCountsWeighted.py	blob \| history \| raw
-rwxr-xr-x	5849	geneNeighbors.py	blob \| history \| raw
-rwxr-xr-x	6271	geneStallingBins.py	blob \| history \| raw
-rwxr-xr-x	3488	geneStartBins.py	blob \| history \| raw
-rwxr-xr-x	4714	geneUpstreamBins.py	blob \| history \| raw
-rwxr-xr-x	3268	getGOgenes.py	blob \| history \| raw
-rwxr-xr-x	2389	getNovelSNPs.py	blob \| history \| raw
-rwxr-xr-x	5462	getSNPGeneInfo.py	blob \| history \| raw
-rwxr-xr-x	8207	getSNPs.py	blob \| history \| raw
-rwxr-xr-x	14097	getallNRSE.py	blob \| history \| raw
-rwxr-xr-x	10977	getallgenes.py	blob \| history \| raw
-rwxr-xr-x	7986	getallsites.py	blob \| history \| raw
-rwxr-xr-x	7327	getfasta.py	blob \| history \| raw
-rwxr-xr-x	7436	getgosig.py	blob \| history \| raw
-rwxr-xr-x	1098	getmers.py	blob \| history \| raw
-rwxr-xr-x	5365	getsplicefa.py	blob \| history \| raw
-rw-r--r--	1849	gfftocis.py	blob \| history \| raw
-rwxr-xr-x	901	gointersects.py	blob \| history \| raw
-rwxr-xr-x	5730	intersects.py	blob \| history \| raw
-rwxr-xr-x	1434	listGeneFeatures.py	blob \| history \| raw
-rw-r--r--	3525	makeGraphs.py	blob \| history \| raw
-rwxr-xr-x	2264	makeSNPtrack.py	blob \| history \| raw
-rwxr-xr-x	16374	makebedfromrds.py	blob \| history \| raw
-rwxr-xr-x	4065	makerdsfrombed.py	blob \| history \| raw
-rwxr-xr-x	13305	makerdsfromblat.py	blob \| history \| raw
-rwxr-xr-x	11688	makerdsfrombowtie.py	blob \| history \| raw
-rwxr-xr-x	23474	makerdsfromeland2.py	blob \| history \| raw
-rwxr-xr-x	3355	makesitetrack.py	blob \| history \| raw
-rwxr-xr-x	8674	makewiggle.py	blob \| history \| raw
-rw-r--r--	7740	normalizeExpandedExonic.py	blob \| history \| raw
-rwxr-xr-x	5642	normalizeFinalExonic.py	blob \| history \| raw
-rwxr-xr-x	5845	partition.py	blob \| history \| raw
-rwxr-xr-x	1654	peakstoregion.py	blob \| history \| raw
-rwxr-xr-x	6379	plotbardist.py	blob \| history \| raw
-rwxr-xr-x	3368	plotnomogram.py	blob \| history \| raw
-rwxr-xr-x	3891	plotprofile.py	blob \| history \| raw
-rwxr-xr-x	2592	predictSpliceCount.py	blob \| history \| raw
-rwxr-xr-x	5138	profilebins.py	blob \| history \| raw
-rwxr-xr-x	2578	ratio.py	blob \| history \| raw
-rwxr-xr-x	4263	rdsmetadata.py	blob \| history \| raw
-rwxr-xr-x	559	recordLog.py	blob \| history \| raw
-rwxr-xr-x	2488	regionBins.py	blob \| history \| raw
-rwxr-xr-x	9334	regionCounts.py	blob \| history \| raw
-rwxr-xr-x	8437	regionintersects.py	blob \| history \| raw
-rwxr-xr-x	4405	regiontobed.py	blob \| history \| raw
-rw-r--r--	779	rnaAToIFilter.py	blob \| history \| raw
-rw-r--r--	3477	rnaEditing.py	blob \| history \| raw
-rwxr-xr-x	6940	rnafarPairs.py	blob \| history \| raw
drwxr-xr-x	-	rnapath	tree \| history
-rwxr-xr-x	10926	scatterfields.py	blob \| history \| raw
-rwxr-xr-x	3899	siteintersects.py	blob \| history \| raw
-rwxr-xr-x	5389	stallCategory.py	blob \| history \| raw
drwxr-xr-x	-	test	tree \| history
-rwxr-xr-x	2204	transcripts.py	blob \| history \| raw
-rwxr-xr-x	3881	trimreads.py	blob \| history \| raw
-rwxr-xr-x	2680	utrChanges.py	blob \| history \| raw
-rwxr-xr-x	10493	weighMultireads.py	blob \| history \| raw