# Produce list of submissions associated with a cell/replicate
PREFIX xsd:<http://www.w3.org/2001/XMLSchema#>
PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>
PREFIX ucscSubmission:<http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
PREFIX libraryOntology:<http://jumpgate.caltech.edu/wiki/LibraryOntology#>
PREFIX daf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
PREFIX ddf: <http://encodesubmit.ucsc.edu/pipeline/download_ddf#>

construct { ?library ddf:treatment ?treatment ;
                     ddf:protocol ?pcr . }
WHERE {
   ?status ucscSubmission:has_file ?file .
   ?submission ucscSubmission:has_status ?status ;
               ucscSubmission:library_urn ?library ;
               ucscSubmission:name ?name .
   ?file ddf:treatment ?treatment ;
         ddf:protocol ?pcr .
}