First: LibrariesMakefile

i) Set up sequence repository
ii) Build binaries
iii) Perl packages: XML::Simple, Statistics::Descriptive
iv) Build reference data

1) Set ROOT_DIR, DATA_DIR, and HTML_DIR in LibrariesMakefile

Second: Projects/Tasks: ConfigureTasks.pm

i) Build QuEST
ii) NEED (TODO): Platform Version of BioProspector/genomebg
iii) MACS installation. Make sure MACS is installed in your PATH, and it should be found automatically using "which macs"
iv) WingWong's Peak Caller (TODO: Need License)
v) Primer3 must be installed in your PATH

Parameters:
my $root_dir = shift; (htswanalysis)
my $data_dir = shift; (data repository base)
my $parm = shift; ("all")

Set url for getProjects in scripts/analys_track_comm.py

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