{% load humanize %}
<style type="text/css">
  /* <![CDATA[ */
  table, td {
    border-style: solid;
  }
  table {
    border-width: 0 0 1px 1px;
    border-spacing: 0;
    border-collapse: collapse;
  }
  td {
    margin: 0;
    padding: 4px;
    border-width: 1px 1px 0 0;
  }
  thead {
    text-align: center;
    }
  tbody {
    text-align: right;
  }
  /* ]]> */
</style>

<h2>About this library</h2>
<b>Library ID</b>: {{ lib.library_id }}<br/>
<b>Name</b>: {{ lib.library_name }}<br/>
<b>Species</b>: {{ lib.library_species.scientific_name }}<br/>
<b>Affiliations</b>:
<ul>
  {% for individual in lib.affiliations.all %}
    <li>{{ individual.name }} ( {{ individual.contact }} )</li>
  {% endfor %}
</ul>

<h2>Raw Result Files</h2>
<table>
<thead>
  <tr>
    <td>Cycle</td>
    <td>Flowcell</td>
    <td>Lane</td>
    <td>Summary</td>
    <td>Eland</td>
    <td>Bed</td>
    <td>Archived</td>
  </tr>
{% for result in eland_results %}
<tr>
  <td>{{ result.cycle }}</td>
  <td>{{ result.flowcell_id }}</td>
  <td>{{ result.lane }}</td>
  <td><a href="{{ result.summary_url }}">Summary</a></td>
  <td><a href="{{ result.result_url }}">{{ result.result_label }}</a></td>
  <td>
  {% if result.bed_url %}
    <a href="{{ result.bed_url }}">Bed</a>
  {% endif %}
  </td>
  <td>
    {% if result.storage_ids %}
      {{ result.storage_ids }}
    {% endif %}
  </td>
</tr>
{% endfor %}
</table>

<h2>Lane Summary Statistics</h2>
{% block summary_stats %}
<table>
  <thead>
    <tr>
      <td colspan="7"></td>
      <td colspan="2">No Match</td>
      <td colspan="2">QC Failed</td>
      <td colspan="4">Unique</td>
      <td colspan="4">Repeat</td>
    </tr>
    <tr>
    <td>Cycles</td>
    <td>Flowcell</td>
    <td>Lane</td>
    <td>End</td>
    <td>Cluster / Tile</td>
    <td>pM</td>
    <td>Raw Reads</td>
    <td>total</td>
    <td>%</td>
    <td>total</td>
    <td>%</td>
    <td>0 mismatch</td>
    <td>1 mismatch</td>
    <td>2 mismatch</td>
    <td>Total</td>
    <td>0 mismatch</td>
    <td>1 mismatch</td>
    <td>2 mismatch</td>
    <td>Total</td>
    </tr>
  </thead>
  <tbody>

    {% for lane in lane_summary_list %}
    <tr>
      <td>{{ lane.cycle_width }}</td>
      <td>{{ lane.flowcell_id }}</td>
      <td>{{ lane.lane_id }}</td>
      <td>{% if lane.end %}{{ lane.end }}{% endif %}</td>
      <td>{{ lane.clusters.0|intcomma }}</td>
      <td>{{ lane.successful_pm }}</td>
      <td>{{ lane.reads|intcomma }}</td>
      <td>{{ lane.no_match|intcomma }}</td>
      <td>{{ lane.no_match_percent|stringformat:".2f" }}</td>
      <td>{{ lane.qc_failed|intcomma }}</td>
      <td>{{ lane.qc_failed_percent|stringformat:".2f" }}</td>
      <td>{{ lane.match_codes.U0|intcomma }}</td>
      <td>{{ lane.match_codes.U1|intcomma }}</td>
      <td>{{ lane.match_codes.U2|intcomma }}</td>
      <td>{{ lane.unique_reads|intcomma }}</td>
      <td>{{ lane.match_codes.R0|intcomma }}</td>
      <td>{{ lane.match_codes.R1|intcomma }}</td>
      <td>{{ lane.match_codes.R2|intcomma }}</td>
      <td>{{ lane.repeat_reads|intcomma }}</td>
    </tr>
    {% endfor %}
  </tbody>
</table>
<br/>
<hr/>
<h2>Count of multi-reads</h2>
{% for lane in lane_summary_list %}
  {% if lane.summarized_reads %}
  <h3>
    {{lane.cycle_width}} {{ lane.flowcell_id }} lane {{ lane.lane_id }} 
    {% if lane.end %} end {{ lane.end }}{% endif %}
  </h3>
  <ul>
    {% for name, counts in lane.summarized_reads.items %}
    <li><b>{{ name }}</b>: {{ counts|intcomma }}</li>
    {% endfor %}
  </ul>
  {% endif %}
{% endfor %}
{% endblock %}