PREFIX libraryOntology: <http://jumpgate.caltech.edu/wiki/LibraryOntology#>
PREFIX submissionOntology: <http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
PREFIX ucscDaf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
PREFIX cells: <http://encodewiki.ucsc.edu/EncodeDCC/index.php/Cell_lines#>

# right now we're just grabbing the sequencer model
# it might make sense to report each of the flowcell/image software.
select ?flowcell ?read_length ?image_software ?image_version ?basecall_software ?basecall_version
where {
  <{{submission}}> submissionOntology:library ?library ;
                   a submissionOntology:submission .

  ?library libraryOntology:library_id ?library_id ;
           libraryOntology:has_lane ?lane ;
           a libraryOntology:library .
  OPTIONAL { ?flowcell libraryOntology:has_lane ?lane .
             ?flowcell libraryOntology:read_length ?read_length ;
                       libraryOntology:image_software ?image_software ;
                       libraryOntology:image_version ?image_version ;
                       libraryOntology:basecall_software ?basecall_software ;
                       libraryOntology:basecall_version ?basecall_version ;
                       libraryOntology:sequenced_by ?sequencer .
             ?sequencer libraryOntology:sequencer_model ?sequencer_model
  }
}