Generate html reports when doing sparql queries with encode_find.

[htsworkflow.git] / encode_submission / encode_find.py

diff --git a/encode_submission/encode_find.py b/encode_submission/encode_find.py
index 24ed16872cf7654d25cd40f5b0ad977976512e52..70f280f7e4f4f18c46c8206674ab27960001a82f 100644 (file)
--- a/encode_submission/encode_find.py
+++ b/encode_submission/encode_find.py
@@ -20,6 +20,9 @@ import sys
 import urllib
 import urlparse
 
+if not 'DJANGO_SETTINGS_MODULE' in os.environ:
+    os.environ['DJANGO_SETTINGS_MODULE'] = 'htsworkflow.settings'
+
 from htsworkflow.submission import daf, ucsc
 
 from htsworkflow.util import api
@@ -124,7 +127,7 @@ def main(cmdline=None):
             load_encodedcc_files(model, **track_info )
 
     if opts.sparql is not None:
-        sparql_query(model, opts.sparql)
+        sparql_query(model, opts.sparql, 'html')
 
     if opts.find_submission_with_no_library:
         report_submissions_with_no_library(model)