Use the same model for building fastqs as for building soft file

[htsworkflow.git] / encode_submission / geo_gather.py

diff --git a/encode_submission/geo_gather.py b/encode_submission/geo_gather.py
index a2901058371ecec871224076f94362a3eaf6ce43..5d6bf1142f193c3c88a566270ed6579b4f58273c 100644 (file)
--- a/encode_submission/geo_gather.py
+++ b/encode_submission/geo_gather.py
@@ -79,6 +79,7 @@ def main(cmdline=None):
     if opts.fastq:
         flowcells = os.path.join(opts.sequence, 'flowcells')
         extractor = CondorFastqExtract(opts.host, flowcells,
+                                       model=opts.model,
                                        force=opts.force)
         extractor.create_scripts(results)