This might actually generate soft file with raw & supplemental data.

[htsworkflow.git] / encode_submission / geo_gather.py

diff --git a/encode_submission/geo_gather.py b/encode_submission/geo_gather.py
index 9db286d37b6326e1b576e1045a3c04b5e92beabe..f9b07ab775a4491226db9c9b97215ea82f7cc54e 100644 (file)
--- a/encode_submission/geo_gather.py
+++ b/encode_submission/geo_gather.py
@@ -58,9 +58,7 @@ def main(cmdline=None):
     model = get_model(opts.model, opts.db_path)
     mapper = None
     if opts.name:
-        mapper = GEOSubmission(opts.name,  model)
-        if opts.library_url is not None:
-            mapper.library_url = opts.library_url
+        mapper = GEOSubmission(opts.name,  model, host=opts.host)
         submission_uri = get_submission_uri(opts.name)