import RDF
+if not 'DJANGO_SETTINGS_MODULE' in os.environ:
+ os.environ['DJANGO_SETTINGS_MODULE'] = 'htsworkflow.settings'
+
from htsworkflow.util import api
from htsworkflow.util.rdfhelp import \
dafTermOntology, \
mapper.link_daf(results)
if opts.fastq:
- extractor = CondorFastqExtract(opts.host, apidata, opts.sequence,
+ flowcells = os.path.join(opts.sequence, 'flowcells')
+ extractor = CondorFastqExtract(opts.host, flowcells,
force=opts.force)
extractor.create_scripts(results)