move experiment templates into the experiments app

[htsworkflow.git] / experiments / templates / experiments / flowcell_detail.html

diff --git a/experiments/templates/experiments/flowcell_detail.html b/experiments/templates/experiments/flowcell_detail.html
new file mode 100644 (file)
index 0000000..64da7e2
--- /dev/null
+++ b/experiments/templates/experiments/flowcell_detail.html
@@ -0,0 +1,128 @@
+{% extends "base_site.html" %}
+{% load staticfiles %}
+{% load humanize i18n %}
+{% block extrahead %}
+    <!-- App Stuff -->
+    <link type="text/css" rel="stylesheet" href="{% static "css/app.css" %}" />
+    <script type="text/javascript" src="{% static "js/jquery.min.js" %}"></script>
+
+    {% block additional_javascript %}
+    {% endblock %}
+{% endblock %}
+
+{% block content %}
+<div>
+  {% include "experiments/flowcell_header.html" %}
+  <div class="htswdetail" typeof="libns:IlluminaFlowcell" resource="{{flowcell.get_absolute_url}}">
+    <h2>Lanes</h2>
+    <table>
+      <thead>
+       <tr>
+         <td>Lane</td>
+         <td>Library ID</td>
+         <td>Library Name</td>
+         <td>Species</td>
+         <td>Comment</td>
+       </tr>
+      </thead>
+      <tbody>
+      {% for lane in lanes %}
+        <tr>
+          <td rel="libns:has_lane">
+            <a href="{{lane.get_absolute_url}}" typeof="libns:IlluminaLane">
+              <span property="libns:lane_number">{{lane.lane_number}}</span>
+            </a>
+          </td>
+          <td rel="libns:library"
+              about="{{lane.get_absolute_url}}"
+              resource="{{lane.library.get_absolute_url}}">
+            <a typeof="libns:Library" href="{{lane.library.get_absolute_url}}">
+              <span property="libns:library_id"
+                    >{{lane.library.id}}</span></a>
+              {% if user.is_staff %}
+              <a href="{{lane.library.get_admin_url}}">
+                  <img class="icon_button"
+                       src="{% static "admin/img/icon_changelink.gif" %}"/>
+              </a>{% endif %}
+          </td>
+          <td>
+            <a href="{{lane.library.get_absolute_url}}">
+              <span property="libns:name"
+                    about="{{lane.library.get_absolute_url}}"
+                    >{{lane.library.library_name}}</span>
+            </a>
+          </td>
+          <td about="{{lane.library.get_absolute_url}}" rel="libns:species">
+            <a href="{{lane.library.library_species.get_absolute_url}}"
+               typeof="libns:Species">
+              <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a>
+          </td>
+          <td about="{{lane.get_absolute_url}}">
+            <span property="libns:comment">{{lane.comment}}</span>
+          </td>
+        </tr>
+      {% endfor %}
+      </tbody>
+    </table>
+    <div class="htsw_flowcell_ivc">
+    {% for run in flowcell.datarun_set.all %}
+       <h2>Run {{ run.runfolder_name }}</h2>
+       {% if run.lane_files %}
+       <table>
+         <thead>
+           <tr>
+             <td>Lane</td>
+             <td>IVC All</td>
+             <td>IVC Call</td>
+             <td>IVC Percent Base</td>
+             <td>IVC Percent Base All</td>
+             <td>IVC Percent Base Called</td>
+           </tr>
+         </thead>
+         <tbody>
+            {% for lane_id, lane_file_set in run.lane_files.items %}
+            {% if lane_file_set.ivc_all %}
+            <tr>
+              <td>{{ lane_id }}</td>
+              <td>
+                <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
+                <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
+                     src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
+              </td>
+              <td>
+                <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
+                <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
+                     src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
+                </a>
+              </td>
+              <td>
+                <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
+                <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
+                     src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
+                </a>
+              </td>
+              <td>
+                <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
+                <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
+                     src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
+                </a>
+              </td>
+              <td>
+                <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
+                <img height="84" width="126"
+                     alt="Lane {{lane_id }} IVC % Base Called"
+                     src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
+                </a>
+              </td>
+            </tr>
+            {% endif %}
+            {% endfor %}
+         </tbody>
+       </table>
+       {% endif %}
+    {% endfor %}
+    </div>
+  </div>
+</div>
+<!-- end flowcell_detail -->
+{% endblock %}