move experiment templates into the experiments app

[htsworkflow.git] / experiments / templates / experiments / flowcell_lane_detail.html

diff --git a/experiments/templates/experiments/flowcell_lane_detail.html b/experiments/templates/experiments/flowcell_lane_detail.html
new file mode 100644 (file)
index 0000000..ebe2c59
--- /dev/null
+++ b/experiments/templates/experiments/flowcell_lane_detail.html
@@ -0,0 +1,98 @@
+{% extends "base_site.html" %}
+{% load humanize i18n %}
+{% load staticfiles %}
+{% block extrahead %}
+    <!-- App Stuff -->
+    <link type="text/css" rel="stylesheet" href="{% static "css/app.css" %}"/>
+    <script type="text/javascript" src="{% static "js/jquery.min.js" %}"></script>
+
+    {% block additional_javascript %}
+    {% endblock %}
+{% endblock %}
+
+{% block content %}
+<div id="lane_detail" class="htswdetail" typeof="libns:IlluminaLane" resource="{{lane.get_absolute_url}}">
+  <div rel="libns:flowcell" resource="{{flowcell.get_absolute_url}}">
+  {% include "experiments/flowcell_header.html" %}
+  </div>
+  <div class="flowcell_lane_detail">
+  <h2>About this lane</h2>
+  <b>Lane</b>:
+    <span property="libns:lane_number">{{lane.lane_number}}</span><br/>
+  <b>pM</b>:
+    <span property="libns:pM" datatype="xsd:decimal">{{ lane.pM }}</span><br/>
+  {% if lane.cluster_estimate %}
+  <b>Cluster Estimate</b>:
+    <span property="libns:cluster_estimate" datatype="xsd:decimal"
+          content="{{lane.cluster_estimate}}">{{ lane.cluster_estimate|intcomma }}</span><br/>{% endif %}
+  {% if lane.status %}
+  <b>Lane Status</b>:
+    <span property="libns:status">{{ lane.status }}</span><br/>{% endif %}
+  {% if lane.comment %}
+  <b>Comments</b>:
+    <span property="libns:comment">{{ lane.comment }}</span><br/>{% endif %}
+  </div>
+  <hr/>
+  {% include "sample_header.html" %}
+  <hr/>
+  <div class="htsw_flowcell_ivc">
+  {% for run in flowcell.datarun_set.all %}
+     <h2>Run {{ run.runfolder_name }}</h2>
+     <table>
+       <thead>
+         <tr>
+           <td>Lane</td>
+           <td>IVC All</td>
+           <td>IVC Call</td>
+           <td>IVC Percent Base</td>
+           <td>IVC Percent Base All</td>
+           <td>IVC Percent Base Called</td>
+         </tr>
+       </thead>
+       <tbody>
+          {% for run, lane_number, lane_file_set in filtered_dataruns %}
+          {% if lane_file_set.ivc_all %}
+          <tr>
+            <td>{{lane_number}}</td>
+            <td>
+              <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
+              <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
+                   src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
+            </td>
+            <td>
+              <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
+              <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
+                   src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
+              </a>
+            </td>
+            <td>
+              <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
+              <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
+                   src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
+              </a>
+            </td>
+            <td>
+              <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
+              <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
+                   src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
+              </a>
+            </td>
+            <td>
+              <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
+              <img height="84" width="126"
+                   alt="Lane {{lane_id }} IVC % Base Called"
+                   src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
+              </a>
+            </td>
+          </tr>
+          {% else %}
+            <tr><td colspan="6">No data</td></tr>
+          {% endif %}
+          {% endfor %}
+       </tbody>
+     </table>
+  {% endfor %}
+  </div>
+</div>
+
+{% endblock %}