Move ucsc_encode_submission code out of extra so nose will autodiscover it.

[htsworkflow.git] / extra / ucsc_encode_submission / add-treatment-to-library.sparql

diff --git a/extra/ucsc_encode_submission/add-treatment-to-library.sparql b/extra/ucsc_encode_submission/add-treatment-to-library.sparql
deleted file mode 100644 (file)
index c97dce2..0000000
--- a/extra/ucsc_encode_submission/add-treatment-to-library.sparql
+++ /dev/null
@@ -1,19 +0,0 @@
-# Produce list of submissions associated with a cell/replicate
-PREFIX xsd:<http://www.w3.org/2001/XMLSchema#>
-PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>
-PREFIX ucscSubmission:<http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
-PREFIX libraryOntology:<http://jumpgate.caltech.edu/wiki/LibraryOntology#>
-PREFIX daf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
-PREFIX ddf: <http://encodesubmit.ucsc.edu/pipeline/download_ddf#>
-
-construct { ?library ddf:treatment ?treatment ;
-                     ddf:protocol ?pcr . }
-WHERE {
-   ?status ucscSubmission:has_file ?file .
-   ?submission ucscSubmission:has_status ?status ;
-               ucscSubmission:library_urn ?library ;
-               ucscSubmission:name ?name .
-   ?file ddf:treatment ?treatment ;
-         ddf:protocol ?pcr .
-}
-