Further clean up ddf generation.

[htsworkflow.git] / extra / ucsc_encode_submission / encode_find.py

diff --git a/extra/ucsc_encode_submission/encode_find.py b/extra/ucsc_encode_submission/encode_find.py
index 25cacb782647855d64fb30c9ca7200776f8e4ada..2a1890afd4a44ba426f7befe895727b4f4309139 100644 (file)
--- a/extra/ucsc_encode_submission/encode_find.py
+++ b/extra/ucsc_encode_submission/encode_find.py
@@ -21,6 +21,7 @@ from htsworkflow.util.rdfhelp import \
      dublinCoreNS, \
      get_model, \
      get_serializer, \
+     sparql_query, \
      submitOntology, \
      libraryOntology, \
      load_into_model, \
@@ -353,18 +354,6 @@ def get_date_contents(element):
     else:
         return None
 
-def sparql_query(model, query_filename):
-    """Execute sparql query from file
-    """
-    query_body = open(query_filename,'r').read()
-    query = RDF.SPARQLQuery(query_body)
-    results = query.execute(model)
-    for row in results:
-        output = []
-        for k,v in row.items()[::-1]:
-            print "{0}: {1}".format(k,v)
-        print 
-
         
 def load_into_model(model, parser_name, filename):
     if not os.path.exists(filename):