Move ucsc_encode_submission code out of extra so nose will autodiscover it.

[htsworkflow.git] / extra / ucsc_encode_submission / failed-submissions.sparql

diff --git a/extra/ucsc_encode_submission/failed-submissions.sparql b/extra/ucsc_encode_submission/failed-submissions.sparql
deleted file mode 100644 (file)
index af4af4e..0000000
--- a/extra/ucsc_encode_submission/failed-submissions.sparql
+++ /dev/null
@@ -1,22 +0,0 @@
-##
-## Find submissions that are currently "failed"
-##
-
-PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>
-PREFIX submitOnt:<http://jumpgate.caltech.edu/wiki/UCSCSubmissionOntology#>
-PREFIX libOntNS:<http://jumpgate.caltech.edu/wiki/LibraryOntology#">
-
-#libraryNS = RDF.NS("http://jumpgate.caltech.edu/library/")
-#submissionNS = RDF.NS("http://encodesubmit.ucsc.edu/pipeline/show/")
-#ddfNS = RDF.NS("http://encodesubmit.ucsc.edu/pipeline/download_ddf#")
-
-SELECT 
- ?subid ?subname ?liburn ?status
-WHERE {
-  ?subid submitOnt:name ?subname .
-  ?subid submitOnt:library_urn ?liburn .
-  ?subid submitOnt:has_status ?statusNode .
-  ?statusNode submitOnt:status ?status .
-  ?statusNode submitOnt:last_modify_date ?last_modify .
-  FILTER (regex(?status, "failed", "i"))
-}