Move ucsc_encode_submission code out of extra so nose will autodiscover it.

[htsworkflow.git] / extra / ucsc_encode_submission / find-lib-by-cell.sparql

diff --git a/extra/ucsc_encode_submission/find-lib-by-cell.sparql b/extra/ucsc_encode_submission/find-lib-by-cell.sparql
deleted file mode 100644 (file)
index c4585c5..0000000
--- a/extra/ucsc_encode_submission/find-lib-by-cell.sparql
+++ /dev/null
@@ -1,17 +0,0 @@
-# Produce list of submissions associated with a cell/replicate
-PREFIX xsd:<http://www.w3.org/2001/XMLSchema#>
-PREFIX rdfs:<http://www.w3.org/2000/01/rdf-schema#>
-PREFIX ucscSubmission:<http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
-PREFIX libraryOntology:<http://jumpgate.caltech.edu/wiki/LibraryOntology#>
-
-SELECT distinct ?liburn ?cell ?replicate ?subid ?name ?submission_date
-WHERE {
-    ?subid ucscSubmission:name ?name .
-    OPTIONAL { ?subid ucscSubmission:library_urn ?liburn ;
-                       libraryOntology:date ?submission_date .
-               ?liburn libraryOntology:cell_line ?cell ;
-                       libraryOntology:replicate ?replicate . }
-    #filter(?submission_date > "2011-04-01T00:00:00Z"^^xsd:dateTime)
-    #filter(!bound(?liburn))
-}
-ORDER BY ?submission_date ?cell ?replicate ?liburn