split rsync directory listing correctly

[htsworkflow.git] / gaworkflow / copier.py

diff --git a/gaworkflow/copier.py b/gaworkflow/copier.py
index 9420208e4a285e6cbf2e21e1603f899c4fd5efaa..f59eafb9a1eb851f7e3237413b3ba1b3dcf38dca 100644 (file)
--- a/gaworkflow/copier.py
+++ b/gaworkflow/copier.py
@@ -32,13 +32,19 @@ class rsync(object):
 
   def list(self):
     """Get a directory listing"""
-    dirs_to_copy = []
     args = copy.copy(self.cmd)
     args.append(self.source_base)
 
     logging.debug("Rsync cmd:" + " ".join(args))
     short_process = subprocess.Popen(args, stdout=subprocess.PIPE)
-    direntries = [ x.split() for x in short_process.stdout ]
+    return self.list_parser(short_process.stdout)
+
+  def list_filter(self, lines):
+    """
+    parse rsync directory listing
+    """
+    dirs_to_copy = []
+    direntries = [ x[0:42].split() + [x[43:]] for x in lines ]
     for permissions, size, filedate, filetime, filename in direntries:
       if permissions[0] == 'd':
         # hey its a directory, the first step to being something we want to