+++ /dev/null
-from django import newforms as forms
-from django.newforms.util import ErrorList
-
-
-SPECIES_LIST = [#('--choose--', '--Choose--'),
- ('hg18', 'Homo sapiens (Hg18)'),
- ('Mm8', 'Mus musculus (Mm8)'),
- ('arabv6', 'Arabadopsis Thaliana v6'),
- ('other', 'Other species (Include in description)')]
-
-
-class DivErrorList(ErrorList):
- def __unicode__(self):
- return self.as_divs()
-
- def as_divs(self):
- if not self: return u''
- return u'<div class="errorlist">%s</div>' % (''.join([u'<div class="error">%s</div>' % e for e in self]))
-
-
-
-class ConfigForm(forms.Form):
-
- flow_cell_number = forms.CharField(min_length=2)
- run_date = forms.DateTimeField()
- advanced_run = forms.BooleanField(required=False)
- read_length = forms.IntegerField(min_value=1, initial=32)
- #eland_repeat = forms.BooleanField()
-
- #needs a for loop or something to allow for n configurations
- #analysis_type = forms.ChoiceField(choices=[('eland','eland')])
- lane1_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane1_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- lane2_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane2_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- lane3_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane3_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- lane4_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane4_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- lane5_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane5_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- lane6_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane6_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- lane7_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane7_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- lane8_species = forms.ChoiceField(choices=SPECIES_LIST)
- lane8_description = forms.CharField(widget=forms.TextInput(attrs={'size':'60'}))
-
- notes = forms.CharField(widget=forms.Textarea(attrs={'cols':'70'}), required=False)
-
- #lane_specific_read_length = forms.IntegerField(min_value=1)
-
- #eland_genome_lanes = forms.MultipleChoiceField(choices=[('lane1','1'),
- # ('lane2','2'),
- # ('lane3','3'),
- # ('lane4','4'),
- # ('lane5','5'),
- # ('lane6','6'),
- # ('lane7','7'),
- # ('lane8','8') ])
-
- #eland_genome = forms.ChoiceField(choices=)
-
- #use_bases_lanes = forms.MultipleChoiceField(choices=[('lane1','1'),
- # ('lane2','2'),
- # ('lane3','3'),
- # ('lane4','4'),
- # ('lane5','5'),
- # ('lane6','6'),
- # ('lane7','7'),
- # ('lane8','8') ])
-
- #use_bases_mask = forms.CharField()
-
- #sequence_format = forms.ChoiceField(choices=[('scarf', 'scarf')])
-
-
-
- #subject = forms.CharField(max_length=100)
- #message = forms.CharField()
- #sender = forms.EmailField()
- #cc_myself = forms.BooleanField()
-
- def as_custom(self):
- """
- Displays customized html output
- """
- html = []
-
- fcn = self['flow_cell_number']
-
- html.append(fcn.label_tag() + ': ' + str(fcn) + str(fcn.errors) + '<br />')
-
- run_date = self['run_date']
- html.append(run_date.label_tag() + ': ' + str(run_date) + str(run_date.errors) + '<br />')
-
- arun = self['advanced_run']
- html.append(arun.label_tag() + ': ' + str(arun) + str(arun.errors) + '<br />')
-
- rl = self['read_length']
- html.append(rl.label_tag() + ': ' + str(rl) + str(rl.errors) + '<br /><br />')
-
- html.append('<table border="0">')
- html.append(' <tr><td>%s</td><td>%s</td><td>%s</td></tr>' \
- % ('Lane', 'Species', 'Description'))
-
- l1s = self['lane1_species']
- l1d = self['lane1_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('1', str(l1s), str(l1s.errors), str(l1d), str(l1d.errors)))
-
- l2s = self['lane2_species']
- l2d = self['lane2_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('2', str(l2s), str(l2s.errors), str(l2d), str(l2d.errors)))
-
- l3s = self['lane3_species']
- l3d = self['lane3_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('3', str(l3s), str(l3s.errors), str(l3d), str(l3d.errors)))
-
- l4s = self['lane4_species']
- l4d = self['lane4_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('4', str(l4s), str(l4s.errors), str(l4d), str(l4d.errors)))
-
- l5s = self['lane5_species']
- l5d = self['lane5_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('5', str(l5s), str(l5s.errors), str(l5d), str(l5d.errors)))
-
- l6s = self['lane6_species']
- l6d = self['lane6_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('6', str(l6s), str(l6s.errors), str(l6d), str(l6d.errors)))
-
- l7s = self['lane7_species']
- l7d = self['lane7_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('7', str(l7s), str(l7s.errors), str(l7d), str(l7d.errors)))
-
- l8s = self['lane8_species']
- l8d = self['lane8_description']
- html.append(' <tr><td>%s</td><td>%s %s</td><td>%s %s</td></tr>' \
- % ('8', str(l8s), str(l8s.errors), str(l8d), str(l8d.errors)))
-
- html.append('</table><br />')
-
- notes = self['notes']
- html.append('<p>Notes:</p>')
- html.append(' %s<br />' % (str(notes)))
-
- return '\n'.join(html)
-
-
-
\ No newline at end of file
projects / htsworkflow.git / blobdiff