add additional debugging logging to retrieve_config and configure_pipeline

[htsworkflow.git] / gaworkflow / pipeline / configure_run.py

diff --git a/gaworkflow/pipeline/configure_run.py b/gaworkflow/pipeline/configure_run.py
index 272d1ae3431ecff959ec05ec85de8fc7d8d32a0f..e75d73ad50c88ea4fe55d8cdb684e500e29119dd 100644 (file)
--- a/gaworkflow/pipeline/configure_run.py
+++ b/gaworkflow/pipeline/configure_run.py
@@ -392,11 +392,13 @@ def retrieve_config(conf_info, flowcell, cfg_filepath, genome_dir):
   genome_dict = getAvailableGenomes(genome_dir)
   mapper_dict = constructMapperDict(genome_dict)
 
+  logging.debug(data)
+
   f = open(cfg_filepath, 'w')
   f.write(data % (mapper_dict))
   f.close()
   
-  return True  
+  return True