Add validation primer code to MACS source

[htsworkflow.git] / htswanalysis / scripts / ConfigureTasks.pm

diff --git a/htswanalysis/scripts/ConfigureTasks.pm b/htswanalysis/scripts/ConfigureTasks.pm
index 3aab29c0380bba6415dea5fa3dea1df258edd873..9cf527ae6f678884cab828939a6793d7c5ce46ff 100755 (executable)
--- a/htswanalysis/scripts/ConfigureTasks.pm
+++ b/htswanalysis/scripts/ConfigureTasks.pm
@@ -359,6 +359,7 @@ sub WritePeakCallingTasks {
 
         $cmd .= "\n".$name."_peaks.bed: ".$name."_peaks.xls\n";
         $cmd .= "\t$root_dir/scripts/MACS_2_BED.sh $< $name > $@\n\n"
+        $cmd .= "\t/Library/WebServer/CGI-Executables/ValidationDesign/primer_design_cmd.pm http://m304-apple-server.stanford.edu/Tasks/$task/".$name."_peaks.bed $signal > ValidationPrimers.html\n\n";
 
         $cmd .= "\n".$name."_peaks.tab: ".$name."_peaks.bed\n";
         $cmd .= "\t".'cat $< | awk \'{print NR"\t"$$1"\t"$$2"\t"$$3"\t1"}\' > $@'."\n\n";