Added framework for methylseq analysis.

[htsworkflow.git] / htswanalysis / src / Makefile

diff --git a/htswanalysis/src/Makefile b/htswanalysis/src/Makefile
index 02ce9796ed6eef5242352f342919ddfa04de797c..4b22aa9406be97b3d5e28c09722d3d9a7670529a 100644 (file)
--- a/htswanalysis/src/Makefile
+++ b/htswanalysis/src/Makefile
@@ -1,12 +1,15 @@
 CPPFLAGS=-g -Wall -O3 -I/opt/local/include
 LDFLAGS=-lgsl -lgslcblas -lm -L/opt/local/lib
 
-TARGETS=complexity_count qPCR profile_reads_against_features profile_reads_wig count_reads_in_peaks ValidationDesign/refine_peaks
+TARGETS=complexity_count qPCR profile_reads_against_features profile_reads_wig count_reads_in_peaks ValidationDesign/refine_peaks Methylseq/Methylseq_Analysis
 
 all: $(TARGETS)
 
 ValidationDesign/refine_peaks: ValidationDesign/refine_peaks.cpp
-       cd ValidationDesign && make
+       cd ValidationDesign && $(MAKE)
+
+Methhylseq/Methylseq_Analysis: Methylseq/Methylseq_Analysis.cpp
+       cd Methylseq && $(MAKE)
 
 install: $(TARGETS)
        cp $^ ../bin/