Added new program to profile reads using bedgraph format. Deep sequencing projects...

[htsworkflow.git] / htswanalysis / src / Makefile

diff --git a/htswanalysis/src/Makefile b/htswanalysis/src/Makefile
index 4b22aa9406be97b3d5e28c09722d3d9a7670529a..dbeb0669ffd52374183bc150ba4ace57598b2dab 100644 (file)
--- a/htswanalysis/src/Makefile
+++ b/htswanalysis/src/Makefile
@@ -1,7 +1,7 @@
 CPPFLAGS=-g -Wall -O3 -I/opt/local/include
 LDFLAGS=-lgsl -lgslcblas -lm -L/opt/local/lib
 
-TARGETS=complexity_count qPCR profile_reads_against_features profile_reads_wig count_reads_in_peaks ValidationDesign/refine_peaks Methylseq/Methylseq_Analysis
+TARGETS=complexity_count qPCR profile_reads_against_features profile_reads_wig count_reads_in_peaks GetReadsInSnps/getReadsInSnps ValidationDesign/refine_peaks Methylseq/Methylseq_Analysis count_reads_in_regions profile_reads_bedgraph
 
 all: $(TARGETS)
 
@@ -11,6 +11,9 @@ ValidationDesign/refine_peaks: ValidationDesign/refine_peaks.cpp
 Methhylseq/Methylseq_Analysis: Methylseq/Methylseq_Analysis.cpp
        cd Methylseq && $(MAKE)
 
+GetReadsInSnps/getReadsInSnps: GetReadsInSnps/getReadsInSnps.cpp
+       cd GetReadsInSnps && $(MAKE)
+
 install: $(TARGETS)
        cp $^ ../bin/