[
- {"pk": 1, "model": "samples.affiliation",
+ {"pk": 5, "model": "auth.user",
+ "fields": {
+ "username": "test",
+ "first_name": "",
+ "last_name": "",
+ "is_active": true,
+ "is_superuser": false,
+ "is_staff": false,
+ "last_login": "2009-01-01T00:00:01-0800",
+ "groups": [],
+ "user_permissions": [],
+ "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
+ "email": "",
+ "date_joined": "2009-01-01T00:01:01-0800"
+ }
+ },
+ {"pk": 5, "model": "samples.htsuser",
+ "fields" : {}
+ },
+ {"pk": 6, "model": "auth.user",
+ "fields": {
+ "username": "admintest",
+ "first_name": "",
+ "last_name": "",
+ "is_active": true,
+ "is_superuser": false,
+ "is_staff": true,
+ "last_login": "2009-01-01T00:00:01-0800",
+ "groups": [],
+ "user_permissions": [],
+ "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
+ "email": "",
+ "date_joined": "2009-01-01T00:01:01-0800"
+ }
+ },
+ {"pk": 6, "model": "samples.htsuser",
+ "fields" : {}
+ },
+ {"pk": 7, "model": "auth.user",
+ "fields": {
+ "username": "supertest",
+ "first_name": "",
+ "last_name": "",
+ "is_active": true,
+ "is_superuser": true,
+ "is_staff": true,
+ "last_login": "2009-01-01T00:00:01-0800",
+ "groups": [],
+ "user_permissions": [],
+ "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
+ "email": "",
+ "date_joined": "2009-01-01T00:01:01-0800"
+ }
+ },
+ {"pk": 7, "model": "samples.htsuser",
+ "fields" : {}
+ },
+ {"pk": 1, "model": "samples.affiliation",
"fields": {
- "users": [],
+ "users": [5],
"contact": "group 1",
"name": "affiliation 1",
"email": "pk1@example.com"
},
{"pk": 2, "model": "samples.affiliation",
"fields": {
- "users": [],
+ "users": [6],
"contact": "group 2",
"name": "affiliation 2",
"email": "pk2@example.com"
"email": "pk5@example.com"
}
},
- {"pk": 5, "model": "auth.user",
- "fields": {
- "username": "test",
- "first_name": "",
- "last_name": "",
- "is_active": true,
- "is_superuser": false,
- "is_staff": false,
- "last_login": "2009-01-01 00:00:01",
- "groups": [],
- "user_permissions": [],
- "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
- "email": "",
- "date_joined": "2009-01-01 00:01:01"
- }
- },
- {"pk": 6, "model": "auth.user",
- "fields": {
- "username": "admintest",
- "first_name": "",
- "last_name": "",
- "is_active": true,
- "is_superuser": false,
- "is_staff": true,
- "last_login": "2009-01-01 00:00:01",
- "groups": [],
- "user_permissions": [],
- "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
- "email": "",
- "date_joined": "2009-01-01 00:01:01"
- }
- },
- {"pk": 1, "model": "experiments.clusterstation", "fields": {"name": "old"}},
- {"pk": 2, "model": "experiments.clusterstation", "fields": {"name": "loaner"}},
- {"pk": 3, "model": "experiments.clusterstation", "fields": {"name": "new"}},
- {"pk": 1, "model": "experiments.sequencer", "fields": {"name": "Rotifer (HWI-EAS229)"}},
- {"pk": 2, "model": "experiments.sequencer", "fields": {"name": "Tardigrade"}},
- {"pk": 3, "model": "experiments.sequencer", "fields": {"name": "Sequenced somewhere else."}},
- {"pk": 153, "model": "experiments.flowcell",
+ {"pk": 1, "model": "experiments.clusterstation",
+ "fields": {"name": "old", "isdefault": false}},
+ {"pk": 2, "model": "experiments.clusterstation",
+ "fields": {"name": "loaner", "isdefault": true}},
+ {"pk": 3, "model": "experiments.clusterstation",
+ "fields": {"name": "new", "isdefault": false}},
+ {"pk": 1, "model": "experiments.sequencer",
+ "fields": { "name": "Rotifer (HWI-EAS229)",
+ "model": "Illumina Genome Analyzer I",
+ "active": false,
+ "isdefault": false }},
+ {"pk": 2, "model": "experiments.sequencer",
+ "fields": {"name": "Tardigrade",
+ "instrument_name": "ILLUMINA-EC5D15",
+ "model": "Illumina Genome Analyzer IIx",
+ "active": true,
+ "isdefault": true}
+ },
+ {"pk": 3, "model": "experiments.sequencer",
+ "fields": {"name": "Sequenced somewhere else.",
+ "model": "Unknown",
+ "active": true,
+ "isdefault": false}},
+ {"pk": 153, "model": "experiments.flowcell",
"fields": {
- "paired_end": true,
- "run_date": "2009-09-11 22:12:13",
- "read_length": 75,
+ "paired_end": true,
+ "run_date": "2007-09-27T22:12:13-0800",
+ "read_length": 36,
"notes": "",
"advanced_run": false,
"control_lane": 2,
"cluster_station": 3,
"sequencer": 2,
- "flowcell_id": "303TUAAXX"
+ "flowcell_id": "FC12150"
}
- },
+ },
{"pk": 1193, "model": "experiments.lane",
"fields": {
"comment": "No change in cluster numbers, despite slight increase in pM",
- "library": 10984,
+ "library": "10981",
"cluster_estimate": 129000,
"flowcell": 153,
"lane_number": 1,
"pM": "8"
}
- },
- {"pk": 10984, "model": "samples.library",
+ },
+ {"pk": 1192, "model": "experiments.lane",
+ "fields": {
+ "comment": "Other library",
+ "library": "11070",
+ "cluster_estimate": 132000,
+ "flowcell": 153,
+ "lane_number": 1,
+ "pM": "7"
+ }
+ },
+
+ {"pk": "10981", "model": "samples.library",
"fields": {
- "library_id": "10981",
- "ten_nM_dilution": false,
- "avg_lib_size": 400,
- "library_name": "Paired End Multiplexed Sp-BAC",
- "creation_date": "2009-07-21",
- "cell_line": 1,
- "library_species": 10,
- "library_type": null,
- "made_by": "Igor",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 400,
+ "library_name": "Paired End Multiplexed Sp-BAC",
+ "creation_date": "2009-07-21",
+ "cell_line": 1,
+ "library_species": 10,
+ "library_type": null,
+ "made_by": "Igor",
"affiliations": [
1,2
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "Done",
- "tags": [],
- "made_for": "Andy Cameron",
- "amplified_from_sample": null,
- "notes": "Combined 10957-10968",
- "undiluted_concentration": "5.1",
- "successful_pM": null,
- "experiment_type": 10,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "Done",
+ "tags": [],
+ "made_for": "Andy Cameron",
+ "amplified_from_sample": null,
+ "notes": "Combined 10957-10968",
+ "undiluted_concentration": "5.1",
+ "successful_pM": null,
+ "experiment_type": 10,
"antibody": null
}
- },
+ },
{"pk": 1194, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11019,
+ "library": "11016",
"cluster_estimate": 152000,
"flowcell": 153,
"lane_number": 2,
"pM": "7"
}
- },
+ },
{
- "pk": 11019,
- "model": "samples.library",
+ "pk": "11006",
+ "model": "samples.library",
"fields": {
- "library_id": "11016",
- "ten_nM_dilution": false,
- "avg_lib_size": 325,
- "library_name": "Paired End Pfl #3 MP 7/24/9 a",
- "creation_date": "2009-08-06",
- "cell_line": 1,
- "library_species": 2,
- "library_type": 2,
- "made_by": "Lorian",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 325,
+ "library_name": "Paired End Pfl #3 MP 7/24/9",
+ "creation_date": "2009-08-05",
+ "cell_line": 1,
+ "library_species": 8,
+ "library_type": 2,
+ "made_by": "Lorian",
+ "affiliations": [
+ 3
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": true,
+ "stopping_point": "1A",
+ "tags": [],
+ "made_for": "",
+ "amplified_from_sample": null,
+ "notes": "7/31/2009 16:08:22\tColor: Blue",
+ "undiluted_concentration": null,
+ "successful_pM": null,
+ "experiment_type": 8,
+ "antibody": null
+ }
+ },
+ {
+ "pk": "11016",
+ "model": "samples.library",
+ "fields": {
+ "ten_nM_dilution": false,
+ "gel_cut_size": 325,
+ "library_name": "Paired End Pfl #3 MP 7/24/9 a",
+ "creation_date": "2009-08-06",
+ "cell_line": 1,
+ "library_species": 2,
+ "library_type": 2,
+ "made_by": "Lorian",
"affiliations": [
2
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "",
- "amplified_from_sample": 11006,
- "notes": "7/31/2009 16:08:22\tColor: Blue",
- "undiluted_concentration": "35.5",
- "successful_pM": null,
- "experiment_type": 8,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "",
+ "amplified_from_sample": 11006,
+ "notes": "7/31/2009 16:08:22\tColor: Blue",
+ "undiluted_concentration": "35.5",
+ "successful_pM": null,
+ "experiment_type": 8,
"antibody": null
}
- },
+ },
{"pk": 1195, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11042,
+ "library": "SL039",
"cluster_estimate": 162000,
"flowcell": 153,
"lane_number": 3,
"pM": "7"
}
- },
+ },
{
- "pk": 11042,
- "model": "samples.library",
+ "pk": "SL039",
+ "model": "samples.library",
"fields": {
- "library_id": "SL039",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired ends 99 GM12892",
- "creation_date": "2009-08-25",
- "cell_line": 1,
- "library_species": 8,
- "library_type": 2,
- "made_by": "Brian Williams",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired ends 99 GM12892",
+ "creation_date": "2009-08-25",
+ "cell_line": 1,
+ "library_species": 8,
+ "library_type": 2,
+ "made_by": "Brian Williams",
"affiliations": [
3,4
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "Brian Williams",
- "amplified_from_sample": null,
- "notes": "fragment size = 300 bp, Amicon filtered\r\nnanodrop: 56.3",
- "undiluted_concentration": "28.7",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "Brian Williams",
+ "amplified_from_sample": 11006,
+ "notes": "fragment size = 300 bp, Amicon filtered\r\nnanodrop: 56.3",
+ "undiluted_concentration": "28.7",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
- },
+ },
{"pk": 1196, "model": "experiments.lane",
"fields": {
"comment": "This lane's library had the second lowest concentration of all the libraries built at the same time (2.05ng/ul)",
- "library": 11063,
+ "library": "11060",
"cluster_estimate": 24000,
"flowcell": 153,
"lane_number": 4,
"pM": "7"
}
- },
+ },
{
- "pk": 11063,
- "model": "samples.library",
+ "pk": "11060",
+ "model": "samples.library",
"fields": {
- "library_id": "11060",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired ends 100 VC_CN_4_M_MBB1185_s1",
- "creation_date": "2009-09-01",
- "cell_line": 1,
- "library_species": 8,
- "library_type": 2,
- "made_by": "Brian Williams",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired ends 100 VC_CN_4_M_MBB1185_s1",
+ "creation_date": "2009-09-01",
+ "cell_line": 1,
+ "library_species": 8,
+ "library_type": 2,
+ "made_by": "Brian Williams",
"affiliations": [
5
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "Brian Williams",
- "amplified_from_sample": null,
- "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 24.2",
- "undiluted_concentration": "2.05",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "Brian Williams",
+ "amplified_from_sample": 11006,
+ "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 24.2",
+ "undiluted_concentration": "2.05",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
- },
+ },
{"pk": 1197, "model": "experiments.lane",
"fields": {
- "comment": "",
- "library": 11064,
+ "comment": "stuff",
+ "library": "11061",
"cluster_estimate": 140000,
"flowcell": 153,
"lane_number": 5,
- "pM": "7"
+ "pM": "7",
+ "status": 2
}
- },
+ },
{
- "pk": 11064,
- "model": "samples.library",
+ "pk": "11061",
+ "model": "samples.library",
"fields": {
- "library_id": "11061",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired ends 101 VC_CN_4_M_MBB1185_s2",
- "creation_date": "2009-09-01",
- "cell_line": 1,
- "library_species": 8,
- "library_type": 2,
- "made_by": "Brian Williams",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired ends 101 VC_CN_4_M_MBB1185_s2",
+ "creation_date": "2009-09-01",
+ "cell_line": 1,
+ "library_species": 8,
+ "library_type": 2,
+ "made_by": "Brian Williams",
"affiliations": [
2,4
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "Brian Williams",
- "amplified_from_sample": null,
- "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 33.1",
- "undiluted_concentration": "12.9",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "Brian Williams",
+ "amplified_from_sample": null,
+ "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 33.1",
+ "undiluted_concentration": "12.9",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
- },
+ },
{"pk": 1198, "model": "experiments.lane",
"fields": {
"comment": "This lane's library had the lowest concentration of all the libraries built at the same time (1.2ng/ul)",
- "library": 11065,
+ "library": "11062",
"cluster_estimate": 2000,
"flowcell": 153,
"lane_number": 6,
- "pM": "7"
+ "pM": "7",
+ "status": 0
}
- },
+ },
{
- "pk": 11065,
- "model": "samples.library",
+ "pk": "11062",
+ "model": "samples.library",
"fields": {
- "library_id": "11062",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired ends 102 VC_AU_8_M_MBB4721_s1",
- "creation_date": "2009-09-01",
- "cell_line": 1,
- "library_species": 8,
- "library_type": 2,
- "made_by": "Brian Williams",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired ends 102 VC_AU_8_M_MBB4721_s1",
+ "creation_date": "2009-09-01",
+ "cell_line": 1,
+ "library_species": 8,
+ "library_type": 2,
+ "made_by": "Brian Williams",
"affiliations": [
4,5
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "Brian Williams",
- "amplified_from_sample": null,
- "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 13.9",
- "undiluted_concentration": "1.2",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "Brian Williams",
+ "amplified_from_sample": null,
+ "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 13.9",
+ "undiluted_concentration": "1.2",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
- },
+ },
{"pk": 1199, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11066,
+ "library": "11063",
"cluster_estimate": 120000,
"flowcell": 153,
"lane_number": 7,
"pM": "7"
}
- },
+ },
{
- "pk": 11066,
- "model": "samples.library",
+ "pk": "11063",
+ "model": "samples.library",
"fields": {
- "library_id": "11063",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired ends 103 VC_AU_8_M_MBB4721_s2",
- "creation_date": "2009-09-01",
- "cell_line": 1,
- "library_species": 8,
- "library_type": 2,
- "made_by": "Brian Williams",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired ends 103 VC_AU_8_M_MBB4721_s2",
+ "creation_date": "2009-09-01",
+ "cell_line": 1,
+ "library_species": 8,
+ "library_type": 2,
+ "made_by": "Brian Williams",
"affiliations": [
1,3
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "Brian Williams",
- "amplified_from_sample": null,
- "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 46.9",
- "undiluted_concentration": "24.5",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "Brian Williams",
+ "amplified_from_sample": null,
+ "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 46.9",
+ "undiluted_concentration": "24.5",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
- },
+ },
{"pk": 1200, "model": "experiments.lane",
"fields": {
"comment": "This lane's library had the third lowest concentration of all the libraries built at the same time (5.21ng/ul), but gave perfectly normal cluster numbers",
- "library": 11067,
+ "library": "11064",
"cluster_estimate": 157000,
"flowcell": 153,
"lane_number": 8,
}
},
{
- "pk": 11067,
- "model": "samples.library",
+ "pk": "11064",
+ "model": "samples.library",
"fields": {
- "library_id": "11064",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired ends 104 VC_CN_7_M_MBB4898_s1",
- "creation_date": "2009-09-01",
- "cell_line": 1,
- "library_species": 8,
- "library_type": 2,
- "made_by": "Brian Williams",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired ends 104 VC_CN_7_M_MBB4898_s1",
+ "creation_date": "2009-09-01",
+ "cell_line": 1,
+ "library_species": 8,
+ "library_type": 2,
+ "made_by": "Brian Williams",
"affiliations": [
3,5
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "Brian Williams",
- "amplified_from_sample": null,
- "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 20.4",
- "undiluted_concentration": "5.21",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "Brian Williams",
+ "amplified_from_sample": null,
+ "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 20.4",
+ "undiluted_concentration": "5.21",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
},
- {"pk": 152, "model": "experiments.flowcell",
+ {"pk": 152, "model": "experiments.flowcell",
"fields": {
"paired_end": false,
- "run_date": "2009-09-10 18:30:15",
+ "run_date": "2009-09-10T18:30:15-0800",
"read_length": 38,
"notes": "328461 4897273 RGT-0248815\r\n328479 4897265 RGT-0249274\r\n330421 4822845 SR-0005496",
"advanced_run": false,
"sequencer": 1,
"flowcell_id": "42JTNAAXX"
}
- },
+ },
{"pk": 1185, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11038,
+ "library": "11035",
"cluster_estimate": 174000,
"flowcell": 152,
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}
},
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- "pk": 11040,
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- "pk": 11048,
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- "pk": 11059,
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- "pk": 11060,
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- "library": 11068,
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- "pk": 11068,
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"notes": "Rebuild of broken flowcell\r\n\r\n328461 4820241 RGT-0215719\r\n328479 4897265 RGT-0249510\r\n330421 4822845 SR-0005402\r\n",
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- "library": 11037,
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}
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+ }
+ },
+ {"pk": 1379,
+ "model": "experiments.lane",
+ "fields": {
+ "comment": "",
+ "library": "13044",
+ "cluster_estimate": 196000,
+ "flowcell": 151,
+ "lane_number": 4,
+ "pM": "7"
+ }
+ },
+
{
- "pk": 11047,
- "model": "samples.library",
+ "pk": "11044",
+ "model": "samples.library",
"fields": {
- "library_id": "11044",
- "ten_nM_dilution": false,
- "avg_lib_size": 225,
- "library_name": "p300 60h C2 FA KF 12/22/8 a",
- "creation_date": "2009-08-26",
- "cell_line": null,
- "library_species": 9,
- "library_type": 1,
- "made_by": "Lorian",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 225,
+ "library_name": "p300 60h C2 FA KF 12/22/8 a",
+ "creation_date": "2009-08-26",
+ "cell_line": null,
+ "library_species": 9,
+ "library_type": 1,
+ "made_by": "Lorian",
"affiliations": [
3
- ],
- "replicate": 1,
- "condition": null,
- "hidden": false,
- "stopping_point": "2A",
- "tags": [],
- "made_for": "",
- "amplified_from_sample": 11043,
- "notes": "8/21/2009 11:57:54\tColor: Orange.",
- "undiluted_concentration": "22.4",
- "successful_pM": null,
- "experiment_type": 2,
+ ],
+ "replicate": 1,
+ "condition": null,
+ "hidden": false,
+ "stopping_point": "2A",
+ "tags": [],
+ "made_for": "",
+ "amplified_from_sample": null,
+ "notes": "8/21/2009 11:57:54\tColor: Orange.",
+ "undiluted_concentration": "22.4",
+ "successful_pM": null,
+ "experiment_type": 2,
"antibody": null
}
- },
+ },
{"pk": 1180, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11050,
+ "library": "11047",
"cluster_estimate": 200000,
"flowcell": 151,
"lane_number": 4,
"pM": "7"
}
- },
+ },
{
- "pk": 11050,
- "model": "samples.library",
+ "pk": "11047",
+ "model": "samples.library",
"fields": {
- "library_id": "11047",
- "ten_nM_dilution": false,
- "avg_lib_size": 250,
- "library_name": "FLDN1 7/8/9 anti-TriMeH3K27 chip B6 a",
- "creation_date": "2009-08-26",
- "cell_line": null,
- "library_species": 9,
- "library_type": 1,
- "made_by": "Lorian",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 250,
+ "library_name": "FLDN1 7/8/9 anti-TriMeH3K27 chip B6 a",
+ "creation_date": "2009-08-26",
+ "cell_line": null,
+ "library_species": 9,
+ "library_type": 1,
+ "made_by": "Lorian",
"affiliations": [
4
- ],
- "replicate": 1,
- "condition": null,
- "hidden": false,
- "stopping_point": "2A",
- "tags": [],
- "made_for": "",
- "amplified_from_sample": 11046,
- "notes": "8/21/2009 11:57:54\tColor: Green",
- "undiluted_concentration": "24.9",
- "successful_pM": null,
- "experiment_type": 2,
+ ],
+ "replicate": 1,
+ "condition": null,
+ "hidden": false,
+ "stopping_point": "2A",
+ "tags": [],
+ "made_for": "",
+ "amplified_from_sample": null,
+ "notes": "8/21/2009 11:57:54\tColor: Green",
+ "undiluted_concentration": "24.9",
+ "successful_pM": null,
+ "experiment_type": 2,
"antibody": null
}
- },
+ },
{"pk": 1181, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11058,
+ "library": "11055",
"cluster_estimate": 104000,
"flowcell": 151,
"lane_number": 5,
"pM": "7"
}
- },
+ },
{
- "pk": 11058,
- "model": "samples.library",
+ "pk": "11055",
+ "model": "samples.library",
"fields": {
- "library_id": "11055",
- "ten_nM_dilution": false,
- "avg_lib_size": 225,
- "library_name": "HNDHT 4H8 hnd-1 strain HT115 fed 4H8 2% fix plate a",
- "creation_date": "2009-08-31",
- "cell_line": null,
- "library_species": 3,
- "library_type": 1,
- "made_by": "Lorian",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 225,
+ "library_name": "HNDHT 4H8 hnd-1 strain HT115 fed 4H8 2% fix plate a",
+ "creation_date": "2009-08-31",
+ "cell_line": null,
+ "library_species": 3,
+ "library_type": 1,
+ "made_by": "Lorian",
"affiliations": [
5
- ],
- "replicate": 1,
- "condition": null,
- "hidden": false,
- "stopping_point": "1Aa",
- "tags": [],
- "made_for": "",
- "amplified_from_sample": 11052,
- "notes": "8/26/2009 14:46:56\tColor: White.",
- "undiluted_concentration": "2.17",
- "successful_pM": null,
- "experiment_type": 2,
+ ],
+ "replicate": 1,
+ "condition": null,
+ "hidden": false,
+ "stopping_point": "1Aa",
+ "tags": [],
+ "made_for": "",
+ "amplified_from_sample": null,
+ "notes": "8/26/2009 14:46:56\tColor: White.",
+ "undiluted_concentration": "2.17",
+ "successful_pM": null,
+ "experiment_type": 2,
"antibody": null
}
- },
+ },
{"pk": 1182, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11070,
+ "library": "11067",
"cluster_estimate": 168000,
"flowcell": 151,
"lane_number": 6,
"pM": "7"
}
- },
+ },
{
- "pk": 11070,
- "model": "samples.library",
+ "pk": "11067",
+ "model": "samples.library",
"fields": {
- "library_id": "11067",
- "ten_nM_dilution": false,
- "avg_lib_size": 325,
- "library_name": "Paired End SP-BAC Barcoding test 250-300 bp",
- "creation_date": "2009-09-03",
- "cell_line": 1,
- "library_species": 10,
- "library_type": 2,
- "made_by": "Igor",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 325,
+ "library_name": "Paired End SP-BAC Barcoding test 250-300 bp",
+ "creation_date": "2009-09-03",
+ "cell_line": 1,
+ "library_species": 10,
+ "library_type": 2,
+ "made_by": "Igor",
"affiliations": [
1
- ],
- "replicate": 1,
- "condition": 1,
- "hidden": false,
- "stopping_point": "Done",
- "tags": [],
- "made_for": "Andy Cameron",
- "amplified_from_sample": null,
- "notes": "12 SP BACs",
- "undiluted_concentration": "1.45",
- "successful_pM": null,
- "experiment_type": 8,
+ ],
+ "replicate": 1,
+ "condition": 1,
+ "hidden": false,
+ "stopping_point": "Done",
+ "tags": [],
+ "made_for": "Andy Cameron",
+ "amplified_from_sample": null,
+ "notes": "12 SP BACs",
+ "undiluted_concentration": "1.45",
+ "successful_pM": null,
+ "experiment_type": 8,
"antibody": null
}
- },
+ },
{"pk": 1183, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11072,
+ "library": "11069",
"cluster_estimate": 184000,
"flowcell": 151,
"lane_number": 7,
"pM": "7"
}
- },
+ },
{
- "pk": 11072,
- "model": "samples.library",
+ "pk": "11069",
+ "model": "samples.library",
"fields": {
- "library_id": "11069",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired End AG-3d-1 AG domain of floral meristem day 3, rep 1",
- "creation_date": "2009-09-02",
- "cell_line": null,
- "library_species": 6,
- "library_type": 2,
- "made_by": "Yuling Jiao",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired End AG-3d-1 AG domain of floral meristem day 3, rep 1",
+ "creation_date": "2009-09-02",
+ "cell_line": null,
+ "library_species": 6,
+ "library_type": 2,
+ "made_by": "Yuling Jiao",
"affiliations": [
2
- ],
- "replicate": 1,
- "condition": null,
- "hidden": false,
- "stopping_point": "Done",
- "tags": [],
- "made_for": "",
- "amplified_from_sample": null,
- "notes": "nanodrop: Xng/ul.",
- "undiluted_concentration": "18.3",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": null,
+ "hidden": false,
+ "stopping_point": "Done",
+ "tags": [],
+ "made_for": "",
+ "amplified_from_sample": null,
+ "notes": "nanodrop: Xng/ul.",
+ "undiluted_concentration": "18.3",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
- },
+ },
{"pk": 1184, "model": "experiments.lane",
"fields": {
"comment": "",
- "library": 11073,
+ "library": "11070",
"cluster_estimate": 182000,
"flowcell": 151,
"lane_number": 8,
}
},
{
- "pk": 11073,
- "model": "samples.library",
+ "pk": "11070",
+ "model": "samples.library",
"fields": {
- "library_id": "11070",
- "ten_nM_dilution": false,
- "avg_lib_size": 300,
- "library_name": "Paired End AG-5d-1 AG domain of floral meristem day 5, rep 1",
- "creation_date": "2009-09-02",
- "cell_line": null,
- "library_species": 6,
- "library_type": 2,
- "made_by": "Yuling Jiao",
+ "ten_nM_dilution": false,
+ "gel_cut_size": 300,
+ "library_name": "Paired End AG-5d-1 AG domain of floral meristem day 5, rep 1",
+ "creation_date": "2009-09-02",
+ "cell_line": null,
+ "library_species": 6,
+ "library_type": 2,
+ "made_by": "Yuling Jiao",
"affiliations": [
3
- ],
- "replicate": 1,
- "condition": null,
- "hidden": false,
- "stopping_point": "Done",
- "tags": [],
- "made_for": "",
- "amplified_from_sample": null,
- "notes": "nanodrop: 40ng/ul\r\nCalibrated qbit with standards.\r\nMeasured 2ul library with qbit using HS kit.\r\n",
- "undiluted_concentration": "20.3",
- "successful_pM": null,
- "experiment_type": 4,
+ ],
+ "replicate": 1,
+ "condition": null,
+ "hidden": false,
+ "stopping_point": "Done",
+ "tags": [],
+ "made_for": "",
+ "amplified_from_sample": null,
+ "notes": "nanodrop: 40ng/ul\r\nCalibrated qbit with standards.\r\nMeasured 2ul library with qbit using HS kit.\r\n",
+ "undiluted_concentration": "20.3",
+ "successful_pM": null,
+ "experiment_type": 4,
"antibody": null
}
- }
-
+ },
+ {"pk": 200, "model": "experiments.flowcell",
+ "fields": {
+ "paired_end": true,
+ "run_date": "2007-09-27T22:12:13-0800",
+ "read_length": 36,
+ "notes": "",
+ "advanced_run": false,
+ "control_lane": 2,
+ "cluster_station": 3,
+ "sequencer": 2,
+ "flowcell_id": "30012AAXX (failed)"
+ }
+ },
+ {"pk": 201, "model": "experiments.lane",
+ "fields": {
+ "comment": "",
+ "library": "11070",
+ "cluster_estimate": 182000,
+ "flowcell": 200,
+ "lane_number": 8,
+ "pM": "7"
+ }
+ }
]
projects / htsworkflow.git / blobdiff