Rename avg_lib_size to gel_cut_size, and add insert_size

[htsworkflow.git] / htsworkflow / frontend / experiments / fixtures / test_flowcells.json

diff --git a/htsworkflow/frontend/experiments/fixtures/test_flowcells.json b/htsworkflow/frontend/experiments/fixtures/test_flowcells.json
index 8ac03803d17b5f6abbeed3727e8fdcc345f9ecef..37adf5ed03a2645035286e6092f4d2200f54a1f6 100644 (file)
--- a/htsworkflow/frontend/experiments/fixtures/test_flowcells.json
+++ b/htsworkflow/frontend/experiments/fixtures/test_flowcells.json
@@ -128,7 +128,7 @@
   {"pk": "10981", "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 400, 
+            "gel_cut_size": 400, 
             "library_name": "Paired End Multiplexed Sp-BAC", 
             "creation_date": "2009-07-21", 
             "cell_line": 1, 
@@ -167,7 +167,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 325, 
+            "gel_cut_size": 325, 
             "library_name": "Paired End Pfl #3 MP 7/24/9 a", 
             "creation_date": "2009-08-06", 
             "cell_line": 1, 
@@ -206,7 +206,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 99 GM12892", 
             "creation_date": "2009-08-25", 
             "cell_line": 1, 
@@ -245,7 +245,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 100 VC_CN_4_M_MBB1185_s1", 
             "creation_date": "2009-09-01", 
             "cell_line": 1, 
@@ -271,12 +271,13 @@
     }, 
   {"pk": 1197, "model": "experiments.lane",
    "fields": {
-       "comment": "",
+       "comment": "stuff",
        "library": "11061",
        "cluster_estimate": 140000,
        "flowcell": 153,
        "lane_number": 5,
-       "pM": "7"
+       "pM": "7",
+       "status": 2
        }
    }, 
     {
@@ -284,7 +285,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 101 VC_CN_4_M_MBB1185_s2", 
             "creation_date": "2009-09-01", 
             "cell_line": 1, 
@@ -315,7 +316,8 @@
        "cluster_estimate": 2000,
        "flowcell": 153,
        "lane_number": 6,
-       "pM": "7"
+       "pM": "7",
+       "status": 0
        }
    }, 
     {
@@ -323,7 +325,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 102 VC_AU_8_M_MBB4721_s1", 
             "creation_date": "2009-09-01", 
             "cell_line": 1, 
@@ -362,7 +364,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 103 VC_AU_8_M_MBB4721_s2", 
             "creation_date": "2009-09-01", 
             "cell_line": 1, 
@@ -401,7 +403,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 104 VC_CN_7_M_MBB4898_s1", 
             "creation_date": "2009-09-01", 
             "cell_line": 1, 
@@ -453,7 +455,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 95 Gilberto_d3_control_LTA", 
             "creation_date": "2009-08-25", 
             "cell_line": 1, 
@@ -492,7 +494,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 97 Kuntz_PDHT", 
             "creation_date": "2009-08-25", 
             "cell_line": 1, 
@@ -531,7 +533,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 250, 
+            "gel_cut_size": 250, 
             "library_name": "FLDN1 8/3/9 anti-AcH3 chip B6 a", 
             "creation_date": "2009-08-26", 
             "cell_line": null, 
@@ -569,7 +571,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 250, 
+            "gel_cut_size": 250, 
             "library_name": "FLDN1 7/8/9 anti-DiMeH3K4 chip B6 a", 
             "creation_date": "2009-08-26", 
             "cell_line": null, 
@@ -608,7 +610,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 225, 
+            "gel_cut_size": 225, 
             "library_name": "HNDHT HLH hnd-1 strain HT115 fed anti-hlh-1 2% fix plate a", 
             "creation_date": "2009-08-31", 
             "cell_line": null, 
@@ -647,7 +649,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 225, 
+            "gel_cut_size": 225, 
             "library_name": "HNDM3 HLH hnd-1 strain mex-3 fed anti-hlh-1 2% fix plate a", 
             "creation_date": "2009-08-31", 
             "cell_line": null, 
@@ -686,7 +688,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 225, 
+            "gel_cut_size": 225, 
             "library_name": "HNDM3 4H8 hnd-1 strain mex-3 fed 4H8 2% fix plate a", 
             "creation_date": "2009-08-31", 
             "cell_line": null, 
@@ -725,7 +727,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 105 Kuntz PDM3", 
             "creation_date": "2009-09-01", 
             "cell_line": 1, 
@@ -787,7 +789,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 96 Kuntz_PDE1", 
             "creation_date": "2009-08-25", 
             "cell_line": 1, 
@@ -816,7 +818,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired ends 94 Gilberto_d3_denerv_LTA", 
             "creation_date": "2009-08-25", 
             "cell_line": 1, 
@@ -845,7 +847,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 225, 
+            "gel_cut_size": 225, 
             "library_name": "p300 60h C2 FA KF 12/22/8 a", 
             "creation_date": "2009-08-26", 
             "cell_line": null, 
@@ -885,7 +887,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 225, 
+            "gel_cut_size": 225, 
             "library_name": "p300 60h C2 FA KF 12/22/8 a", 
             "creation_date": "2009-08-26", 
             "cell_line": null, 
@@ -924,7 +926,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 250, 
+            "gel_cut_size": 250, 
             "library_name": "FLDN1 7/8/9 anti-TriMeH3K27 chip B6 a", 
             "creation_date": "2009-08-26", 
             "cell_line": null, 
@@ -963,7 +965,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 225, 
+            "gel_cut_size": 225, 
             "library_name": "HNDHT 4H8 hnd-1 strain HT115 fed 4H8 2% fix plate a", 
             "creation_date": "2009-08-31", 
             "cell_line": null, 
@@ -1002,7 +1004,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 325, 
+            "gel_cut_size": 325, 
             "library_name": "Paired End SP-BAC Barcoding test 250-300 bp", 
             "creation_date": "2009-09-03", 
             "cell_line": 1, 
@@ -1041,7 +1043,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired End AG-3d-1 AG domain of floral meristem day 3, rep 1", 
             "creation_date": "2009-09-02", 
             "cell_line": null, 
@@ -1080,7 +1082,7 @@
         "model": "samples.library", 
         "fields": {
             "ten_nM_dilution": false, 
-            "avg_lib_size": 300, 
+            "gel_cut_size": 300, 
             "library_name": "Paired End AG-5d-1 AG domain of floral meristem day 5, rep 1", 
             "creation_date": "2009-09-02", 
             "cell_line": null,