Attempt to be robust to not having an alignment in our RunXml file

[htsworkflow.git] / htsworkflow / frontend / experiments / models.py

diff --git a/htsworkflow/frontend/experiments/models.py b/htsworkflow/frontend/experiments/models.py
index 7a41d3d5902aebe32a56595db04dd859aa6e016d..5152c406e2fc55c87bd997ed7d4ee14197339859 100644 (file)
--- a/htsworkflow/frontend/experiments/models.py
+++ b/htsworkflow/frontend/experiments/models.py
@@ -248,8 +248,10 @@ class FlowCell(models.Model):
             run.image_version = run_xml_data.image_analysis.version
             run.basecall_software = run_xml_data.bustard.software
             run.basecall_version = run_xml_data.bustard.version
-            run.alignment_software = run_xml_data.gerald.software
-            run.alignment_version = run_xml_data.gerald.version
+            # we're frequently not running alignments
+            if run_xml_data.gerald:
+                run.alignment_software = run_xml_data.gerald.software
+                run.alignment_version = run_xml_data.gerald.version
 
             run.last_update_time = datetime.datetime.now()
             run.save()