+import re
+from BeautifulSoup import BeautifulSoup
try:
import json
except ImportError, e:
import simplejson as json
-
+import sys
+
+from django.core import mail
from django.test import TestCase
from htsworkflow.frontend.experiments import models
from htsworkflow.frontend.experiments import experiments
+from htsworkflow.frontend.auth import apidata
+
+LANE_SET = range(1,9)
class ExperimentsTestCases(TestCase):
fixtures = ['test_flowcells.json']
self.failUnlessEqual(lane_dict['flowcell'], lane.flowcell.flowcell_id)
self.failUnlessEqual(lane_dict['lane_number'], lane.lane_number)
self.failUnlessEqual(lane_dict['library_name'], lane.library.library_name)
- self.failUnlessEqual(lane_dict['library_id'], lane.library.library_id)
- self.failUnlessAlmostEqual(lane_dict['pM'], float(lane.pM))
+ self.failUnlessEqual(lane_dict['library_id'], lane.library.id)
+ self.failUnlessAlmostEqual(float(lane_dict['pM']), float(lane.pM))
+ self.failUnlessEqual(lane_dict['library_species'],
+ lane.library.library_species.scientific_name)
- self.client.login(username='test', password='BJOKL5kAj6aFZ6A5')
- response = self.client.get('/experiments/config/%s/json' % (fc_id,))
+ response = self.client.get('/experiments/config/%s/json' % (fc_id,), apidata)
# strptime isoformat string = '%Y-%m-%dT%H:%M:%S'
fc_json = json.loads(response.content)
self.failUnlessEqual(fc_json['flowcell_id'], fc_id)
self.failUnlessEqual(lane_dict['flowcell'], lane.flowcell.flowcell_id)
self.failUnlessEqual(lane_dict['lane_number'], lane.lane_number)
self.failUnlessEqual(lane_dict['library_name'], lane.library.library_name)
- self.failUnlessEqual(lane_dict['library_id'], lane.library.library_id)
- self.failUnlessAlmostEqual(lane_dict['pM'], float(lane.pM))
+ self.failUnlessEqual(lane_dict['library_id'], lane.library.id)
+ self.failUnlessAlmostEqual(float(lane_dict['pM']), float(lane.pM))
+ self.failUnlessEqual(lane_dict['library_species'],
+ lane.library.library_species.scientific_name)
def test_invalid_flowcell(self):
"""
Make sure we get a 404 if we request an invalid flowcell ID
"""
- self.client.login(username='test', password='BJOKL5kAj6aFZ6A5')
- response = self.client.get('/experiments/config/nottheone/json')
+ response = self.client.get('/experiments/config/nottheone/json', apidata)
self.failUnlessEqual(response.status_code, 404)
- def test_not_logged_in(self):
+ def test_no_key(self):
"""
Require logging in to retrieve meta data
"""
response = self.client.get(u'/experiments/config/303TUAAXX/json')
- self.failUnlessEqual(response.status_code, 302)
+ self.failUnlessEqual(response.status_code, 403)
def test_library_id(self):
"""
Library IDs should be flexible, so make sure we can retrive a non-numeric ID
"""
- self.client.login(username='test', password='BJOKL5kAj6aFZ6A5')
- response = self.client.get('/experiments/config/303TUAAXX/json')
+ response = self.client.get('/experiments/config/303TUAAXX/json', apidata)
self.failUnlessEqual(response.status_code, 200)
flowcell = json.loads(response.content)
self.failUnlessEqual(flowcell['lane_set']['3']['library_id'], 'SL039')
- response = self.client.get('/samples/library/SL039/json')
+ response = self.client.get('/samples/library/SL039/json', apidata)
self.failUnlessEqual(response.status_code, 200)
library_sl039 = json.loads(response.content)
self.failUnlessEqual(library_sl039['library_id'], 'SL039')
+
+ def test_raw_id_field(self):
+ """
+ Test ticket:147
+
+ Library's have IDs, libraries also have primary keys,
+ we eventually had enough libraries that the drop down combo box was too
+ hard to filter through, unfortnately we want a field that uses our library
+ id and not the internal primary key, and raw_id_field uses primary keys.
+
+ This tests to make sure that the value entered in the raw library id field matches
+ the library id looked up.
+ """
+ expected_ids = [u'10981',u'11016',u'SL039',u'11060',
+ u'11061',u'11062',u'11063',u'11064']
+ self.client.login(username='supertest', password='BJOKL5kAj6aFZ6A5')
+ response = self.client.get('/admin/experiments/flowcell/153/')
+ soup = BeautifulSoup(response.content)
+ for i in range(0,8):
+ input_field = soup.find(id='id_lane_set-%d-library' % (i,))
+ library_field = input_field.findNext('strong')
+ library_id, library_name = library_field.string.split(':')
+ # strip leading '#' sign from name
+ library_id = library_id[1:]
+ self.failUnlessEqual(library_id, expected_ids[i])
+ self.failUnlessEqual(input_field['value'], library_id)
+
+class TestEmailNotify(TestCase):
+ fixtures = ['test_flowcells.json']
+
+ def test_started_email_not_logged_in(self):
+ response = self.client.get('/experiments/started/153/')
+ self.failUnlessEqual(response.status_code, 302)
+
+ def test_started_email_logged_in_user(self):
+ self.client.login(username='test', password='BJOKL5kAj6aFZ6A5')
+ response = self.client.get('/experiments/started/153/')
+ self.failUnlessEqual(response.status_code, 302)
+
+ def test_started_email_logged_in_staff(self):
+ self.client.login(username='admintest', password='BJOKL5kAj6aFZ6A5')
+ response = self.client.get('/experiments/started/153/')
+ self.failUnlessEqual(response.status_code, 200)
+
+ def test_started_email_send(self):
+ self.client.login(username='admintest', password='BJOKL5kAj6aFZ6A5')
+ response = self.client.get('/experiments/started/153/')
+ self.failUnlessEqual(response.status_code, 200)
+
+ self.failUnless('pk1@example.com' in response.content)
+ self.failUnless('Lane #8 : (11064) Paired ends 104' in response.content)
+
+ response = self.client.get('/experiments/started/153/', {'send':'1','bcc':'on'})
+ self.failUnlessEqual(response.status_code, 200)
+ self.failUnlessEqual(len(mail.outbox), 4)
+ for m in mail.outbox:
+ self.failUnless(len(m.body) > 0)
+
+ def test_email_navigation(self):
+ """
+ Can we navigate between the flowcell and email forms properly?
+ """
+ self.client.login(username='supertest', password='BJOKL5kAj6aFZ6A5')
+ response = self.client.get('/experiments/started/153/')
+ self.failUnlessEqual(response.status_code, 200)
+ self.failUnless(re.search('Flowcell 303TUAAXX', response.content))
+ # require that navigation back to the admin page exists
+ self.failUnless(re.search('<a href="/admin/experiments/flowcell/153/">[^<]+</a>', response.content))
+
projects / htsworkflow.git / blobdiff