from django.template import Context, Template
from django.db import models
from django.utils.translation import ugettext_lazy as _
+from django.forms import TextInput, Textarea
-from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, ExperimentType, HTSUser, LibraryType, Species, Affiliation, Library, Tag
+from htsworkflow.frontend.samples.models import \
+ Antibody, Cellline, Condition, ExperimentType, HTSUser, \
+ LibraryType, MultiplexIndex, Species, Affiliation, Library, Tag
from htsworkflow.frontend.experiments.models import Lane
from htsworkflow.frontend.inventory.models import PrinterTemplate
from htsworkflow.frontend.bcmagic.utils import print_zpl_socket
}),
)
- # some post 1.0.2 version of django has formfield_overrides
+ # some post 1.0.2 version of django has formfield_overrides
# which would replace this code with:
# formfield_overrids = {
# models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
)
class CelllineOptions(admin.ModelAdmin):
- list_display = ('cellline_name', 'nickname', 'notes')
+ list_display = ('cellline_name', 'notes')
search_fields = ('cellline_name', 'nickname', 'notes')
fieldsets = (
(None, {
- 'fields': (('cellline_name'),('notes'),)
+ 'fields': (('cellline_name','nickname',),('notes'),)
}),
)
class HTSUserChangeForm(UserChangeForm):
class Meta:
model = HTSUser
-
+
class HTSUserOptions(UserAdmin):
form = HTSUserChangeForm
add_form = HTSUserCreationForm
model = Library
class LibraryTypeOptions(admin.ModelAdmin):
+ list_display = ['name', 'is_paired_end', 'can_multiplex']
model = LibraryType
+class MultiplexIndexOptions(admin.ModelAdmin):
+ model = MultiplexIndex
+ list_display = ['adapter_type', 'multiplex_id', 'sequence']
+
class LibraryOptions(admin.ModelAdmin):
class Media:
css = {
"all": ("css/wide_account_number.css",)
}
-
+
date_hierarchy = "creation_date"
save_as = True
save_on_top = True
)
list_display = (
'id',
- #'aligned_reads',
- #'DataRun',
'library_name',
- 'public',
- #'experiment_type',
- #'organism',
- #'antibody_name',
- #'cell_line',
- #'libtags',
- #'made_for',
+ 'index_sequence_text',
'affiliation',
- #'made_by',
'undiluted_concentration',
+ 'gel_cut_size',
'creation_date',
- 'stopping_point',
- #'condition',
-
)
list_filter = (
- 'experiment_type',
- 'library_species',
- 'tags',
- #'made_for',
+ 'hidden',
'affiliations',
- 'made_by',
- 'antibody',
+ 'library_species',
+ 'experiment_type',
+ 'made_by',
'cell_line',
- 'condition',
- 'stopping_point',
- 'hidden')
+ 'stopping_point',)
list_display_links = ('id', 'library_name',)
fieldsets = (
(None, {
'fields': (
('id','library_name','hidden'),
- ('library_species'),
- ('library_type', 'experiment_type', 'replicate'),
- ('cell_line','condition','antibody'),)
+ ('library_species', 'experiment_type'),
+ ('library_type', 'multiplex_id'),
+ )
}),
+ ('Experiment Detail:', {
+ 'fields': (('cell_line', 'replicate',),
+ ('condition',),
+ ('antibody', ),
+ ),
+ 'classes': ('collapse',),
+ }),
('Creation Information:', {
- 'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'account_number', 'notes',)
+ 'fields' : (('made_by', 'creation_date', 'stopping_point'),
+ ('amplified_from_sample'),
+ ('gel_cut_size', 'insert_size',
+ 'undiluted_concentration'),
+ ('bioanalyzer_concentration','bioanalyzer_image_url'),
+ ('bioanalyzer_summary'),
+ ('notes'))
}),
('Library/Project Affiliation:', {
- 'fields' : (('affiliations'), ('tags'),)
+ 'fields' : (('account_number', 'affiliations'),)
}),
)
inlines = [
LaneLibraryInline,
]
actions = ['action_print_library_labels']
-
-
+
def action_print_library_labels(self, request, queryset):
"""
Django action which prints labels for the selected set of labels from the
Django Admin interface.
"""
-
+
#Probably should ask if the user really meant to print all selected
# libraries if the count is above X. X=10 maybe?
-
+
# Grab the library template
#FIXME: Hardcoding library template name. Not a good idea... *sigh*.
EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME = "Library"
-
+
try:
template = PrinterTemplate.objects.get(item_type__name=EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME)
except PrinterTemplate.DoesNotExist:
self.message_user(request, "Could not find a library template with ItemType.name of '%s'" % \
(EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME))
return
-
+
# ZPL Template
t = Template(template.template)
-
+
+ zpl_list = []
#Iterate over selected labels to print
for library in queryset.all():
-
+
# Django Template Context
c = Context({'library': library})
-
+
# Send rendered template to the printer that the template
# object has been attached to in the database.
- print_zpl_socket(t.render(c), host=template.printer.ip_address)
-
- self.message_user(request, "%s labels printed." % (len(queryset)))
-
- action_print_library_labels.short_description = "Print Labels"
+ zpl_list.append(t.render(c))
+ print_zpl_socket(zpl_list, host=template.printer.ip_address)
+ self.message_user(request, "%s labels printed." % (len(queryset)))
+
+ action_print_library_labels.short_description = "Print Labels"
- # some post 1.0.2 version of django has formfield_overrides
- # which would replace this code with:
- # formfield_overrids = {
- # models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
- #}
def formfield_for_dbfield(self, db_field, **kwargs):
- if db_field.name in ('affiliations', 'tags'):
- kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name,
- (db_field.name in self.filter_vertical))
- rv = super(LibraryOptions, self).formfield_for_dbfield(db_field, **kwargs)
- return rv
+ # Override Field type
+ if db_field.name in ('affiliations', 'tags'):
+ kwargs['widget'] = widgets.FilteredSelectMultiple(
+ db_field.verbose_name,
+ (db_field.name in self.filter_vertical)
+ )
+ field = super(LibraryOptions, self).formfield_for_dbfield(db_field,
+ **kwargs)
+ # Override field attributes
+ if db_field.name == "bioanalyzer_summary":
+ field.widget.attrs["rows"] = "3"
+ return field
class SpeciesOptions(admin.ModelAdmin):
fieldsets = (
class TagOptions(admin.ModelAdmin):
list_display = ('tag_name', 'context')
- fieldsets = (
+ fieldsets = (
(None, {
'fields': ('tag_name', 'context')
}),
)
+admin.site.register(Library, LibraryOptions)
admin.site.register(Affiliation, AffiliationOptions)
admin.site.register(Antibody, AntibodyOptions)
admin.site.register(Cellline, CelllineOptions)
admin.site.register(Condition, ConditionOptions)
admin.site.register(ExperimentType, ExperimentTypeOptions)
-admin.site.register(HTSUser, HTSUserOptions)
+#admin.site.register(HTSUser, HTSUserOptions)
admin.site.register(LibraryType, LibraryTypeOptions)
-admin.site.register(Library, LibraryOptions)
+admin.site.register(MultiplexIndex, MultiplexIndexOptions)
admin.site.register(Species, SpeciesOptions)
-admin.site.register(Tag, TagOptions)
+#admin.site.register(Tag, TagOptions)
projects / htsworkflow.git / blobdiff