from django.contrib import admin
from django.contrib.admin import widgets
+from django.contrib.admin.models import User
+from django.contrib.auth.admin import UserAdmin
+from django.contrib.auth.forms import UserCreationForm, UserChangeForm
+from django.template import Context, Template
from django.db import models
from django.utils.translation import ugettext_lazy as _
+from django.forms import TextInput, Textarea
-from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, ExperimentType, LibraryType, Species, Affiliation, Library, Tag
+from htsworkflow.frontend.samples.models import \
+ Antibody, Cellline, Condition, ExperimentType, HTSUser, \
+ LibraryType, MultiplexIndex, Species, Affiliation, Library, Tag
+from htsworkflow.frontend.experiments.models import Lane
+from htsworkflow.frontend.inventory.models import PrinterTemplate
+from htsworkflow.frontend.bcmagic.utils import print_zpl_socket
-class Library_Inline(admin.TabularInline):
- model = Library
+# Let's disable those pesky delete everything by accident features.
+admin.site.disable_action('delete_selected')
+
+class AffiliationOptions(admin.ModelAdmin):
+ list_display = ('name','contact','email')
+ fieldsets = (
+ (None, {
+ 'fields': (('name','contact','email','users'))
+ }),
+ )
+
+ # some post 1.0.2 version of django has formfield_overrides
+ # which would replace this code with:
+ # formfield_overrids = {
+ # models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
+ # }
+ def formfield_for_dbfield(self, db_field, **kwargs):
+ if db_field.name == 'users':
+ kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
+ rv = super(AffiliationOptions, self).formfield_for_dbfield(db_field, **kwargs)
+ # print db_field.name, kwargs
+ return rv
+
+class AntibodyOptions(admin.ModelAdmin):
+ search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
+ list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
+ list_filter = ('antibodies','source')
+ fieldsets = (
+ (None, {
+ 'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
+ }),
+ )
class CelllineOptions(admin.ModelAdmin):
- list_display = ('cellline_name', 'nickname', 'notes')
+ list_display = ('cellline_name', 'notes')
search_fields = ('cellline_name', 'nickname', 'notes')
fieldsets = (
(None, {
- 'fields': (('cellline_name'),('notes'),)
+ 'fields': (('cellline_name','nickname',),('notes'),)
+ }),
+ )
+
+class ConditionOptions(admin.ModelAdmin):
+ list_display = (('condition_name'), ('notes'),)
+ fieldsets = (
+ (None, {
+ 'fields': (('condition_name'),('nickname'),('notes'),)
}),
)
#list_display = ('name',)
#fieldsets = ( (None, { 'fields': ('name',) }), )
+class HTSUserCreationForm(UserCreationForm):
+ class Meta:
+ model = HTSUser
+ fields = ("username",'first_name','last_name')
+
+class HTSUserChangeForm(UserChangeForm):
+ class Meta:
+ model = HTSUser
+
+class HTSUserOptions(UserAdmin):
+ form = HTSUserChangeForm
+ add_form = HTSUserCreationForm
+
+class LaneLibraryInline(admin.StackedInline):
+ model = Lane
+ extra = 0
+
+class Library_Inline(admin.TabularInline):
+ model = Library
+
class LibraryTypeOptions(admin.ModelAdmin):
+ list_display = ['name', 'is_paired_end', 'can_multiplex']
model = LibraryType
+class MultiplexIndexOptions(admin.ModelAdmin):
+ model = MultiplexIndex
+ list_display = ['adapter_type', 'multiplex_id', 'sequence']
+
class LibraryOptions(admin.ModelAdmin):
+ class Media:
+ css = {
+ "all": ("css/wide_account_number.css",)
+ }
+
date_hierarchy = "creation_date"
save_as = True
save_on_top = True
search_fields = (
- 'library_id',
+ 'id',
'library_name',
'cell_line__cellline_name',
'library_species__scientific_name',
'library_species__common_name',
)
list_display = (
- 'library_id',
- #'aligned_reads',
- #'DataRun',
+ 'id',
'library_name',
- 'public',
- #'experiment_type',
- #'organism',
- #'antibody_name',
- #'cell_line',
- #'libtags',
- #'made_for',
+ 'index_sequence_text',
'affiliation',
- #'made_by',
'undiluted_concentration',
+ 'gel_cut_size',
'creation_date',
- 'stopping_point',
- #'condition',
-
)
list_filter = (
- 'experiment_type',
- 'library_species',
- 'tags',
- #'made_for',
+ 'hidden',
'affiliations',
- 'made_by',
- 'antibody',
+ 'library_species',
+ 'experiment_type',
+ 'made_by',
'cell_line',
- 'condition',
- 'stopping_point',
- 'hidden')
- list_display_links = ('library_id', 'library_name',)
+ 'stopping_point',)
+ list_display_links = ('id', 'library_name',)
fieldsets = (
(None, {
'fields': (
- ('library_id','library_name','hidden'),
- ('library_species'),
- ('library_type', 'experiment_type', 'replicate'),
- ('cell_line','condition','antibody'),)
+ ('id','library_name','hidden'),
+ ('library_species', 'experiment_type'),
+ ('library_type', 'multiplex_id'),
+ )
}),
+ ('Experiment Detail:', {
+ 'fields': (('cell_line', 'replicate',),
+ ('condition',),
+ ('antibody', ),
+ ),
+ 'classes': ('collapse',),
+ }),
('Creation Information:', {
- 'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'notes',)
+ 'fields' : (('made_by', 'creation_date', 'stopping_point'),
+ ('amplified_from_sample'),
+ ('gel_cut_size', 'insert_size',
+ 'undiluted_concentration'),
+ ('bioanalyzer_concentration','bioanalyzer_image_url'),
+ ('bioanalyzer_summary'),
+ ('notes'))
}),
('Library/Project Affiliation:', {
- 'fields' : (('affiliations'), ('tags'),)
+ 'fields' : (('account_number', 'affiliations'),)
}),
)
+ inlines = [
+ LaneLibraryInline,
+ ]
+ actions = ['action_print_library_labels']
- # some post 1.0.2 version of django has formfield_overrides
- # which would replace this code with:
- # formfield_overrids = {
- # models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
- # }
- def formfield_for_dbfield(self, db_field, **kwargs):
- if db_field.name == 'affiliations':
- kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
- rv = super(LibraryOptions, self).formfield_for_dbfield(db_field, **kwargs)
- print db_field.name, kwargs
- return rv
+ def action_print_library_labels(self, request, queryset):
+ """
+ Django action which prints labels for the selected set of labels from the
+ Django Admin interface.
+ """
-class AffiliationOptions(admin.ModelAdmin):
- list_display = ('name','contact','email')
- fieldsets = (
- (None, {
- 'fields': (('name','contact','email'))
- }),
- )
+ #Probably should ask if the user really meant to print all selected
+ # libraries if the count is above X. X=10 maybe?
-# class UserOptions(admin.ModelAdmin):
-# inlines = [Library_Inline]
+ # Grab the library template
+ #FIXME: Hardcoding library template name. Not a good idea... *sigh*.
+ EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME = "Library"
-class AntibodyOptions(admin.ModelAdmin):
- search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
- list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
- list_filter = ('antibodies','source')
- fieldsets = (
- (None, {
- 'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
- }),
- )
+ try:
+ template = PrinterTemplate.objects.get(item_type__name=EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME)
+ except PrinterTemplate.DoesNotExist:
+ self.message_user(request, "Could not find a library template with ItemType.name of '%s'" % \
+ (EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME))
+ return
+
+ # ZPL Template
+ t = Template(template.template)
+
+ zpl_list = []
+ #Iterate over selected labels to print
+ for library in queryset.all():
+
+ # Django Template Context
+ c = Context({'library': library})
+
+ # Send rendered template to the printer that the template
+ # object has been attached to in the database.
+ zpl_list.append(t.render(c))
+
+ print_zpl_socket(zpl_list, host=template.printer.ip_address)
+
+ self.message_user(request, "%s labels printed." % (len(queryset)))
+
+ action_print_library_labels.short_description = "Print Labels"
+
+ def formfield_for_dbfield(self, db_field, **kwargs):
+ # Override Field type
+ if db_field.name in ('affiliations', 'tags'):
+ kwargs['widget'] = widgets.FilteredSelectMultiple(
+ db_field.verbose_name,
+ (db_field.name in self.filter_vertical)
+ )
+ field = super(LibraryOptions, self).formfield_for_dbfield(db_field,
+ **kwargs)
+ # Override field attributes
+ if db_field.name == "bioanalyzer_summary":
+ field.widget.attrs["rows"] = "3"
+ return field
class SpeciesOptions(admin.ModelAdmin):
fieldsets = (
}),
)
-class ConditionOptions(admin.ModelAdmin):
- list_display = (('condition_name'), ('notes'),)
- fieldsets = (
- (None, {
- 'fields': (('condition_name'),('nickname'),('notes'),)
- }),
- )
-
class TagOptions(admin.ModelAdmin):
list_display = ('tag_name', 'context')
- fieldsets = (
+ fieldsets = (
(None, {
'fields': ('tag_name', 'context')
}),
)
+admin.site.register(Library, LibraryOptions)
admin.site.register(Affiliation, AffiliationOptions)
admin.site.register(Antibody, AntibodyOptions)
admin.site.register(Cellline, CelllineOptions)
admin.site.register(Condition, ConditionOptions)
admin.site.register(ExperimentType, ExperimentTypeOptions)
+#admin.site.register(HTSUser, HTSUserOptions)
admin.site.register(LibraryType, LibraryTypeOptions)
-admin.site.register(Library, LibraryOptions)
+admin.site.register(MultiplexIndex, MultiplexIndexOptions)
admin.site.register(Species, SpeciesOptions)
-admin.site.register(Tag, TagOptions)
+#admin.site.register(Tag, TagOptions)
projects / htsworkflow.git / blobdiff