Fixed dynamic east panel code

[htsworkflow.git] / htsworkflow / frontend / samples / views.py

diff --git a/htsworkflow/frontend/samples/views.py b/htsworkflow/frontend/samples/views.py
index 4b6b3775f78c7546866d8121e5ac16224383a2c9..853a0ff8a3aa217c6c2f2e426bc102324491bc76 100644 (file)
--- a/htsworkflow/frontend/samples/views.py
+++ b/htsworkflow/frontend/samples/views.py
@@ -14,12 +14,16 @@ from django.http import HttpResponse, HttpResponseRedirect
 from django.shortcuts import render_to_response
 from django.template import RequestContext
 from django.template.loader import get_template
+from django.contrib.auth.decorators import login_required
 
 import StringIO
 import logging
 import os
 
 LANE_LIST = [1,2,3,4,5,6,7,8]
+SAMPLES_CONTEXT_DEFAULTS = {
+    'app_name': 'Flowcell/Library Tracker'
+}
 
 def create_library_context(cl):
     """
@@ -41,6 +45,7 @@ def create_library_context(cl):
            lane = getattr(lib, 'lane_%d_library' % (lane_id,))
            lanes_run += len( lane.all() )
        summary['lanes_run'] = lanes_run
+       summary['is_archived'] = lib.is_archived()
        records.append(summary)
     cl.result_count = unicode(cl.paginator._count) + u" libraries"
     return {'library_list': records }
@@ -58,7 +63,17 @@ def library(request):
     context.update(create_library_context(fcl))
     t = get_template('samples/library_index.html')
     c = RequestContext(request, context)
-    return HttpResponse( t.render(c) )
+    
+    app_context = {
+        'page_name': 'Library Index',
+        'east_region_config_div': 'changelist-filter',
+        'body': t.render(c)
+    }
+    app_context.update(SAMPLES_CONTEXT_DEFAULTS)
+    
+    app_t = get_template('flowcell_libraries_app.html')
+    app_c = RequestContext(request, app_context)
+    return HttpResponse( app_t.render(app_c) )
 
 def library_to_flowcells(request, lib_id):
     """
@@ -319,6 +334,25 @@ def _make_eland_results(flowcell_id, lane, interesting_flowcells):
     if cur_fc is None:
       return []
 
+    flowcell = FlowCell.objects.get(flowcell_id=flowcell_id)
+    # Loop throw storage devices if a result has been archived
+    storage_id_list = []
+    if cur_fc is not None:
+        for lts in flowcell.longtermstorage_set.all():
+            for sd in lts.storage_devices.all():
+                # Use barcode_id if it exists
+                if sd.barcode_id is not None and sd.barcode_id != '':
+                    storage_id_list.append(sd.barcode_id)
+                # Otherwise use UUID
+                else:
+                    storage_id_list.append(sd.uuid)
+        
+    # Formatting for template use
+    if len(storage_id_list) == 0:
+        storage_ids = None
+    else:
+        storage_ids = ', '.join(storage_id_list)
+
     results = []
     for cycle in cur_fc.keys():
         result_path = cur_fc[cycle]['eland_results'].get(lane, None)
@@ -330,6 +364,7 @@ def _make_eland_results(flowcell_id, lane, interesting_flowcells):
                         'result_url': result_link[0],
                         'result_label': result_link[1],
                         'bed_url': result_link[2],
+                        'storage_ids': storage_ids
         })
     return results
 
@@ -390,3 +425,17 @@ def library_id_to_admin_url(request, lib_id):
     lib = Library.objects.get(library_id=lib_id)
     return HttpResponseRedirect('/admin/samples/library/%s' % (lib.id,))
 
+@login_required
+def user_profile(request):
+    """
+    Information about the user
+    """
+    context = {
+                'page_name': 'User Profile',
+                'media': '',
+                #'bcmagic': BarcodeMagicForm(),
+                #'select': 'settings',
+            }
+    context.update(SAMPLES_CONTEXT_DEFAULTS)
+    return render_to_response('registration/profile.html', context,
+                              context_instance=RequestContext(request))
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