Record new minor release.

[htsworkflow.git] / htsworkflow / frontend / settings.py

diff --git a/htsworkflow/frontend/settings.py b/htsworkflow/frontend/settings.py
index 9986f7959ed7e99728817a4cf600aecb268c9dc1..78376d416fdfdf5720384e365eb9b003afdd96ed 100644 (file)
--- a/htsworkflow/frontend/settings.py
+++ b/htsworkflow/frontend/settings.py
@@ -26,17 +26,18 @@ The options understood by this module are (with their defaults):
 """
 import ConfigParser
 import os
+import shlex
 
 # make epydoc happy
 __docformat__ = "restructuredtext en"
 
-def options_to_list(dest, section_name):
+def options_to_list(options, dest, section_name, option_name):
   """
   Load a options from section_name and store in a dictionary
   """
-  if options.has_section(section_name):
-    for name in options.options(section_name):
-      dest.append( options.get(section_name, name) )
+  if options.has_option(section_name, option_name):
+    opt = options.get(section_name, option_name)
+    dest.extend( shlex.split(opt) )
       
 def options_to_dict(dest, section_name):
   """
@@ -52,27 +53,50 @@ options = ConfigParser.SafeConfigParser(
              'email_port': '25', 
              'database_engine': 'sqlite3',
              'database_name': 
-               os.path.abspath('/htsworkflow/htswfrontend/dev_fctracker.db'),
+               os.path.abspath('../../fctracker.db'),
              'time_zone': 'America/Los_Angeles',
-             'default_pm': '5'
+             'default_pm': '5',
+             'link_flowcell_storage_device_url': "http://localhost:8000/inventory/lts/link/",
+             'printer1_host': '127.0.0.1',
+             'printer1_port': '9100',
+             'printer2_host': '127.0.0.1',
+             'printer2_port': '9100',
            })
 
 options.read([os.path.expanduser("~/.htsworkflow.ini"),
               '/etc/htsworkflow.ini',])
 
+# OptionParser will use the dictionary passed into the config parser as
+# 'Default' values in any section. However it still needs an empty section
+# to exist in order to retrieve anything.
+if not options.has_section('frontend'):
+    options.add_section('frontend')
+if not options.has_section('bcprinter'):
+    options.add_section('bcprinter')
+
+
 # Django settings for elandifier project.
 
 DEBUG = True
 TEMPLATE_DEBUG = DEBUG
 
 ADMINS = []
-options_to_list(ADMINS, 'admins')
+options_to_list(options, ADMINS, 'frontend', 'admins')
+
+MANAGERS = []
+options_to_list(options, MANAGERS, 'frontend', 'managers')
 
-MANAGERS = ADMINS
+AUTHENTICATION_BACKENDS = ( 'samples.auth_backend.HTSUserModelBackend', )
+CUSTOM_USER_MODEL = 'samples.HTSUser' 
 
 EMAIL_HOST = options.get('frontend', 'email_host')
 EMAIL_PORT = int(options.get('frontend', 'email_port'))
 
+if options.has_option('frontend', 'notification_sender'):
+    NOTIFICATION_SENDER = options.get('frontend', 'notification_sender')
+else:
+    NOTIFICATION_SENDER = "noreply@example.com"
+
 # 'postgresql_psycopg2', 'postgresql', 'mysql', 'sqlite3' or 'ado_mssql'.
 DATABASE_ENGINE = options.get('frontend', 'database_engine')
 
@@ -117,6 +141,9 @@ ADMIN_MEDIA_PREFIX = '/media/'
 # Make this unique, and don't share it with anybody.
 SECRET_KEY = '(ekv^=gf(j9f(x25@a7r+8)hqlz%&_1!tw^75l%^041#vi=@4n'
 
+# some of our urls need an api key
+DEFAULT_API_KEY = 'n7HsXGHIi0vp9j5u4TIRJyqAlXYc4wrH'
+
 # List of callables that know how to import templates from various sources.
 TEMPLATE_LOADERS = (
     'django.template.loaders.filesystem.load_template_source',
@@ -137,6 +164,8 @@ TEMPLATE_DIRS = (
     # Put strings here, like "/home/html/django_templates" or "C:/www/django/templates".
     # Always use forward slashes, even on Windows.
     # Don't forget to use absolute paths, not relative paths.
+    '/usr/share/python-support/python-django/django/contrib/admin/templates',
+    #'/usr/lib/pymodules/python2.6/django/contrib/admin/templates/',
     os.path.join(os.path.split(__file__)[0], 'templates'),
 )
 
@@ -154,6 +183,7 @@ INSTALLED_APPS = (
     'htsworkflow.frontend.analysis', 
     'htsworkflow.frontend.reports',
     'htsworkflow.frontend.inventory',
+    'htsworkflow.frontend.bcmagic',
     'django.contrib.databrowse',
 )
 
@@ -164,8 +194,18 @@ options_to_dict(ALLOWED_IPS, 'allowed_hosts')
 
 ALLOWED_ANALYS_IPS = {'127.0.0.1': '127.0.0.1'}
 options_to_dict(ALLOWED_ANALYS_IPS, 'allowed_analysis_hosts')
-#UPLOADTO_HOME = os.path.abspath('../../uploads')
-#UPLOADTO_CONFIG_FILE = os.path.join(UPLOADTO_HOME, 'eland_config')
-#UPLOADTO_ELAND_RESULT_PACKS = os.path.join(UPLOADTO_HOME, 'eland_results')
-#UPLOADTO_BED_PACKS = os.path.join(UPLOADTO_HOME, 'bed_packs')
-RESULT_HOME_DIR='/Users/diane/proj/solexa/results/flowcells'
+
+UPLOADTO_HOME = os.path.abspath('/home/www/gaworkflow/uploads')
+UPLOADTO_CONFIG_FILE = os.path.join(UPLOADTO_HOME, 'eland_config')
+UPLOADTO_ELAND_RESULT_PACKS = os.path.join(UPLOADTO_HOME, 'eland_results')
+UPLOADTO_BED_PACKS = os.path.join(UPLOADTO_HOME, 'bed_packs')
+
+RESULT_HOME_DIR=os.path.abspath('/woldlab/loxcyc/data00/solexa-sequence/flowcells')
+
+LINK_FLOWCELL_STORAGE_DEVICE_URL = options.get('frontend', 'link_flowcell_storage_device_url')
+# PORT 9100 is default for Zebra tabletop/desktop printers
+# PORT 6101 is default for Zebra mobile printers
+BCPRINTER_PRINTER1_HOST = options.get('bcprinter', 'printer1_host')
+BCPRINTER_PRINTER1_PORT = int(options.get('bcprinter', 'printer1_port'))
+BCPRINTER_PRINTER2_HOST = options.get('bcprinter', 'printer2_host')
+BCPRINTER_PRINTER2_PORT = int(options.get('bcprinter', 'printer2_port'))