{% extends "base_site.html" %}
-{% load adminmedia humanize i18n %}
+{% load staticfiles %}
+{% load humanize i18n %}
{% block extrahead %}
<!-- App Stuff -->
- <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
- <script type="text/javascript" src="/static/js/jquery.min.js"></script>
+ <link type="text/css" rel="stylesheet" href="{% static "css/app.css" %}" />
+ <script type="text/javascript" src="{% static "js/jquery.min.js" %}"></script>
{% block additional_javascript %}
{% endblock %}
{% endblock %}
{% block content %}
-<div id="flowcell_detail">
+<div>
{% include "experiments/flowcell_header.html" %}
- <div class="htswdetail">
+ <div class="htswdetail" typeof="libns:IlluminaFlowcell" resource="{{flowcell.get_absolute_url}}">
<h2>Lanes</h2>
<table>
<thead>
</thead>
<tbody>
{% for lane in lanes %}
- <tr rel="libns:has_lane" resource="{{lane.get_absolute_url}}" >
- <td><a href="{{lane.get_absolute_url}}">
- <span property="libns:lane_number">{{lane.lane_number}}</span></a></td>
- <td><a href="{{lane.library.get_absolute_url}}"
- rel="libns:library"><span property="libns:library_id"
- >{{lane.library.id}}</span></a>
+ <tr>
+ <td rel="libns:has_lane">
+ <a href="{{lane.get_absolute_url}}" typeof="libns:IlluminaLane">
+ <span property="libns:lane_number">{{lane.lane_number}}</span>
+ </a>
+ </td>
+ <td rel="libns:library"
+ about="{{lane.get_absolute_url}}"
+ resource="{{lane.library.get_absolute_url}}">
+ <a typeof="libns:Library" href="{{lane.library.get_absolute_url}}">
+ <span property="libns:library_id"
+ >{{lane.library.id}}</span></a>
{% if user.is_staff %}
<a href="{{lane.library.get_admin_url}}">
<img class="icon_button"
- src="/media/img/admin/icon_changelink.gif"/>
+ src="{% static "admin/img/icon_changelink.gif" %}"/>
</a>{% endif %}
</td>
- <td><a href="{{lane.library.get_absolute_url}}" rel="libns:library"><span property="libns:name">{{lane.library.library_name}}</span></a></td>
- <td><a href="{{lane.library.library_species.get_absolute_url}}" rel="libns:species">
- <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a></td>
- <td><span property="libns:comment">{{lane.comment}}</span></td>
+ <td>
+ <a href="{{lane.library.get_absolute_url}}">
+ <span property="libns:name"
+ about="{{lane.library.get_absolute_url}}"
+ >{{lane.library.library_name}}</span>
+ </a>
+ </td>
+ <td about="{{lane.library.get_absolute_url}}" rel="libns:species">
+ <a href="{{lane.library.library_species.get_absolute_url}}"
+ typeof="libns:Species">
+ <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a>
+ </td>
+ <td about="{{lane.get_absolute_url}}">
+ <span property="libns:comment">{{lane.comment}}</span>
+ </td>
</tr>
{% endfor %}
</tbody>
</table>
- </div>
<div class="htsw_flowcell_ivc">
{% for run in flowcell.datarun_set.all %}
<h2>Run {{ run.runfolder_name }}</h2>
+ {% if run.lane_files %}
<table>
<thead>
<tr>
<td>IVC Percent Base</td>
<td>IVC Percent Base All</td>
<td>IVC Percent Base Called</td>
+ </tr>
</thead>
<tbody>
{% for lane_id, lane_file_set in run.lane_files.items %}
- {% if lane_file_set.ivc_all %}
+ {% if lane_file_set.ivc_all %}
<tr>
<td>{{ lane_id }}</td>
<td>
<a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
+ src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
</td>
<td>
<a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
+ src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
</a>
</td>
<td>
<a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
+ src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
</a>
</td>
<td>
<a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
+ src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
</a>
</td>
<td>
<a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
- <img height="84" width="126" src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
+ <img height="84" width="126"
+ alt="Lane {{lane_id }} IVC % Base Called"
+ src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
</a>
</td>
</tr>
{% endfor %}
</tbody>
</table>
+ {% endif %}
{% endfor %}
</div>
+ </div>
</div>
+<!-- end flowcell_detail -->
{% endblock %}