{% extends "base_site.html" %}
-{% load adminmedia humanize i18n %}
+{% load humanize i18n %}
+{% load staticfiles %}
{% block extrahead %}
<!-- App Stuff -->
- <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
- <script type="text/javascript" src="/static/js/jquery.min.js"></script>
-
+ <link type="text/css" rel="stylesheet" href="{% static "css/app.css" %}"/>
+ <script type="text/javascript" src="{% static "js/jquery.min.js" %}"></script>
+
{% block additional_javascript %}
{% endblock %}
{% endblock %}
{% block content %}
-<div id="lane_detail">
- <h2>About this lane</h2>
+<div id="lane_detail" class="htswdetail" typeof="libns:IlluminaLane" resource="{{lane.get_absolute_url}}">
<div rel="libns:flowcell" resource="{{flowcell.get_absolute_url}}">
- <b>Flowcell</b>:
- <a href="{{flowcell.get_absolute_url}}">{{flowcell.flowcell_id}}</a><br/>
- <b>Run Date</b>:
- <span property="libns:date" content="{{flowcell.run_date|date:'Y-m-d\TH:i:s'}}" datatype="xsd:dateTime">{{ flowcell.run_date }}</span><br/>
- <b>Type</b>:
- <span property="libns:flowcell_type">{{flowcell.flowcell_type}}</span><br/>
+ {% include "experiments/flowcell_header.html" %}
</div>
- <b>Lane</b>:
- <span property="libns:lane_number" datatype="xsd:decimal">{{lane.lane_number}}</span><br/>
- <b>pM</b>
+ <div class="flowcell_lane_detail">
+ <h2>About this lane</h2>
+ <b>Lane</b>:
+ <span property="libns:lane_number">{{lane.lane_number}}</span><br/>
+ <b>pM</b>:
<span property="libns:pM" datatype="xsd:decimal">{{ lane.pM }}</span><br/>
- <b>Cluster Estimate</b>
+ {% if lane.cluster_estimate %}
+ <b>Cluster Estimate</b>:
<span property="libns:cluster_estimate" datatype="xsd:decimal"
- content="{{lane.cluster_estimate}}">{{ lane.cluster_estimate|intcomma }}</span><br/>
- <b>Lane Status</b>:
- <span property="libns:status">{{ lane.status }}</span><br/>
- <b>Comment</b>:
- <span property="libns:comment">{{ lane.comment }}</span><br/>
-
-
- <div rel="libns:library" resource="{{lib.get_absolute_url}}">
- <h2>About the library</h2>
- <b>Library ID</b>:
- <a href="{{lib.get_absolute_url}}" property="libns:library_id">{{ lib.id }}</a><br/>
- <b>Name</b>:
- <span property="libns:name">{{ lib.library_name }}</span>
- <br/>
- <b>Species</b>:
- <a href="{{lib.library_species.get_absolute_url}}" rel="libns:species"><span property="libns:species_name">{{ lib.library_species.scientific_name }}</span></a>
- <br/>
- <b>Concentration</b>:
- <span property="libns:concentration">{{ lib.undiluted_concentration }} ng/µl</span>
- <br/>
- <b>Gel Cut Size</b>:
- <span property="libns:gel_cut">{{ lib.gel_cut_size }}</span>
- <br/>
- <b>Insert Size</b>:
- <span property="libns:insert_size">{{ lib.insert_size }}</span>
- <br/>
- <b>Background or Cell Line</b>:
- <span property="libns:cell_line">{{ lib.cell_line }}</span>
- <br/>
- <b>Replicate</b>:
- <span property="libns:replicate">{{ lib.replicate }}</span>
- <br/>
- <b>Library Type</b>:
- <span property="libns:library_type">{{ lib.library_type }}</span>
- <br/>
- <b>Experiment Type</b>:
- <span property="libns:experiment_type">{{ lib.experiment_type }}</span>
- <br/>
- <b>Made By</b>:
- <span property="libns:made_by">{{ lib.made_by }}</span>
- <br/>
- <b>Creation Date</b>
- <span property="libns:date" content="{{lib.creation_date|date:'Y-m-d'}}T00:00:00" datatype="xsd:dateTime">{{ lib.creation_date }}</span>
- <br/>
- <b>Protocol Stopping Point</b>
- <span property="libns:stopping_point">{{ lib.stopping_point_name }}</span>
- <br/>
- <b>Affiliations</b>:
- <ul>
- {% for individual in lib.affiliations.all %}
- <li property="libns:affliation" content="{{individual.name}}">
- {{ individual.name }} ( {{ individual.contact }} )
- </li>
- {% endfor %}
- </ul>
+ content="{{lane.cluster_estimate}}">{{ lane.cluster_estimate|intcomma }}</span><br/>{% endif %}
+ {% if lane.status %}
+ <b>Lane Status</b>:
+ <span property="libns:status">{{ lane.status }}</span><br/>{% endif %}
+ {% if lane.comment %}
+ <b>Comments</b>:
+ <span property="libns:comment">{{ lane.comment }}</span><br/>{% endif %}
+ </div>
+ <hr/>
+ {% include "sample_header.html" %}
+ <hr/>
+ <div class="htsw_flowcell_ivc">
+ {% for run in flowcell.datarun_set.all %}
+ <h2>Run {{ run.runfolder_name }}</h2>
+ <table>
+ <thead>
+ <tr>
+ <td>Lane</td>
+ <td>IVC All</td>
+ <td>IVC Call</td>
+ <td>IVC Percent Base</td>
+ <td>IVC Percent Base All</td>
+ <td>IVC Percent Base Called</td>
+ </tr>
+ </thead>
+ <tbody>
+ {% for run, lane_number, lane_file_set in filtered_dataruns %}
+ {% if lane_file_set.ivc_all %}
+ <tr>
+ <td>{{lane_number}}</td>
+ <td>
+ <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
+ src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
+ </td>
+ <td>
+ <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
+ src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
+ </a>
+ </td>
+ <td>
+ <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
+ src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
+ </a>
+ </td>
+ <td>
+ <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
+ <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
+ src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
+ </a>
+ </td>
+ <td>
+ <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
+ <img height="84" width="126"
+ alt="Lane {{lane_id }} IVC % Base Called"
+ src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
+ </a>
+ </td>
+ </tr>
+ {% else %}
+ <tr><td colspan="6">No data</td></tr>
+ {% endif %}
+ {% endfor %}
+ </tbody>
+ </table>
+ {% endfor %}
</div>
-</div>
+</div>
+
{% endblock %}
projects / htsworkflow.git / blobdiff