{% block additional_javascript %}
{% endblock %}
-
-<style type="text/css">
- /* <![CDATA[ */
- div#librarydetail {
- margin: 0;
- padding: 0;
- }
- div#librarydetail table, div#librarydetail td {
- border-style: solid;
- }
- div#librarydetail table {
- border-width: 0 0 1px 1px;
- border-spacing: 0;
- border-collapse: collapse;
- }
- div#librarydetail td {
- margin: 0;
- padding: 3px;
- border-width: 1px 1px 0 0;
- }
- div#librarydetail thead {
- text-align: center;
- }
- div#librarydetail tbody {
- text-align: right;
- }
- div#librarydetail h1,
- div#librarydetail h2
- {
- font-size: 150%;
- }
-
- div#librarydetail h3 {
- font-size: 125%;
- margin: 0;
- }
-
- div#librarydetail h4,
- div#librarydetail h5,
- div#librarydetail ul,
- div#librarydetail ol,
- div#librarydetail li
- {
- list-style: none;
- margin: 0;
- }
-
- div#librarydetail ul,
- div#librarydetail ol
- {
- margin-bottom: .5em;
- }
-
- div.library_identity {
- float: left; margin: 5px; }
- div.library_sample_detail { float: left; margin: 5px; }
- div.library_library_detail { float: left; margin: 5px; }
- div.library_statistics { clear: both; border: 1px; }
- /* ]]> */
-</style>
{% endblock %}
{% block content %}
-<div id="librarydetail">
- <div class="library_identity">
- <h2>Library Name</h2>
- <b>Library ID</b>: {{ lib.id }}<br/>
- <b>Name</b>:
- <span property="libns:name">{{ lib.library_name }}</span>
- <br/>
- <b>Affiliations</b>:
- <ul>
- {% for individual in lib.affiliations.all %}
- <li property="libns:affiliation" content="{{individual.name}}">
- {{ individual.name }} ( {{ individual.contact }} )
- </li>
- {% endfor %}
- </ul>
- </div>
- <div class="library_sample_detail">
- <h2>Sample Details</h2>
- <b>Species</b>:
- <span property="libns:species">{{ lib.library_species.scientific_name }}</span>
- <br/>
- <b>Experiment Type</b>:
- <span property="libns:experiment_type">{{ lib.experiment_type }}</span>
- <br/>
- {% if lib.antibody %}
- <b>Antibody</b>:
- <span property="libns:antibody">{{ lib.antibody.antibodies }}</span>
- {% if lib.antibody.antibodies.nuckname %}
- (<span property="libns:antibody_term">{{ lib.antibody.nickname }}</span>)
- {% endif %}
- <br/>
- {% endif %}
- {% if lib.cell_line %}
- <b>Background or Cell Line</b>:
- <span property="libns:cell_line">{{ lib.cell_line }}</span>
- <br/>
- {% endif %}
- {% if lib.condition %}
- <b>Condition</b>:
- <span property="libns:condition">{{ lib.condition.condition_name }}</span>
- {% if lib.condition.nickname %}
- (<span property="libns:condition_term">{{ lib.condition.nickname }}</span>)
- {% endif %}
- <br/>
- {% endif %}
- {% if lib.replicate %}
- <b>Replicate</b>:
- <span property="libns:replicate">{{ lib.replicate }}</span>
- <br/>
- {% endif %}
- </div>
- <div class="library_library_detail">
- <h2>Library Details</h2>
- <b>Library Type</b>:
- <span property="libns:library_type">{{ lib.library_type }}</span>
- <br/>
- <b>Creation Date</b>
- <span property="libns:date" content="{{lib.creation_date|date:'Y-m-d'}}T00:00:00" datatype="xsd:dateTime">{{ lib.creation_date }}</span>
- <br/>
- <b>Made By</b>:
- <span property="libns:made_by">{{ lib.made_by }}</span>
- <br/>
- {% if lib.gel_cut_size %}
- <b>Gel Cut Size</b>:
- <span property="libns:gel_cut">{{ lib.gel_cut_size }}</span>
- <br/>
- {% endif %}
- {% if lib.insert_size %}
- <b>Insert Size</b>:
- <span property="libns:insert_size">{{ lib.insert_size }}</span>
- <br/>
- {% endif %}
- {% if lib.undiluted_concentration %}
- <b>Concentration</b>:
- <span property="libns:concentration">{{ lib.undiluted_concentration }} ng/µl</span>
- <br/>
- {% endif %}
- {% if lib.stopping_point_name %}
- <b>Protocol Stopping Point</b>
- <span property="libns:stopping_point">{{ lib.stopping_point_name }}</span>
- <br/>
- {% endif %}
- </div>
+ {% include "sample_header.html" %}
+ <hr/>
<div class="library_statistics">
<h2>Raw Result Files</h2>
<table>
</thead>
<tbody>
- {% for lane in lane_summary_list %}
- <tr about="/flowcell/{{lane.flowcell_id}}/{{lane.lane_id}}/{% if lane.end %}#end{{ lane.end }}{% endif %}">
- <td>{{ lane.cycle_width }}</td>
- <td>{{ lane.flowcell_id }}</td>
- <td>{{ lane.lane_id }}</td>
- <td>{% if lane.end %}{{ lane.end }}{% endif %}</td>
- <td>{{ lane.clusters.0|intcomma }}</td>
- <td>{{ lane.successful_pm }}</td>
- <td>{{ lane.reads|intcomma }}</td>
- <td>{{ lane.no_match|intcomma }}</td>
- <td>{{ lane.no_match_percent|stringformat:".2f" }}</td>
- <td>{{ lane.qc_failed|intcomma }}</td>
- <td>{{ lane.qc_failed_percent|stringformat:".2f" }}</td>
- <td>{{ lane.match_codes.U0|intcomma }}</td>
- <td>{{ lane.match_codes.U1|intcomma }}</td>
- <td>{{ lane.match_codes.U2|intcomma }}</td>
- <td {% if lane.unique_reads %}property="libns:total_unique_locations" content="{{lane.unique_reads}}" datatype="xsd:decimal"{% endif %}>{{ lane.unique_reads|intcomma }}</td>
- <td>{{ lane.match_codes.R0|intcomma }}</td>
- <td>{{ lane.match_codes.R1|intcomma }}</td>
- <td>{{ lane.match_codes.R2|intcomma }}</td>
- <td>{{ lane.repeat_reads|intcomma }}</td>
+ {# ls short for lane summary #}
+ {% for ls in lane_summary_list %}
+ <tr about="{{ls.lane.get_absolute_url">
+ <td>{{ ls.cycle_width }}</td>
+ <td><a href="{{ls.flowcell.get_absolute_url}}">{{ ls.flowcell_id }}</a></td>
+ <td><a href="{{ls.lane.get_absolute_url}}">{{ ls.lane_id }}</a></td>
+ <td>{% if ls.end %}{{ ls.end }}{% endif %}</td>
+ <td>{{ ls.clusters.0|intcomma }}</td>
+ <td>{{ ls.successful_pm }}</td>
+ <td>{{ ls.reads|intcomma }}</td>
+ <td>{{ ls.no_match|intcomma }}</td>
+ <td>{{ ls.no_match_percent|stringformat:".2f" }}</td>
+ <td>{{ ls.qc_failed|intcomma }}</td>
+ <td>{{ ls.qc_failed_percent|stringformat:".2f" }}</td>
+ <td>{{ ls.match_codes.U0|intcomma }}</td>
+ <td>{{ ls.match_codes.U1|intcomma }}</td>
+ <td>{{ ls.match_codes.U2|intcomma }}</td>
+ <td {% if ls.unique_reads %}property="libns:total_unique_locations" content="{{ls.unique_reads}}" datatype="xsd:decimal"{% endif %}>{{ ls.unique_reads|intcomma }}</td>
+ <td>{{ ls.match_codes.R0|intcomma }}</td>
+ <td>{{ ls.match_codes.R1|intcomma }}</td>
+ <td>{{ ls.match_codes.R2|intcomma }}</td>
+ <td>{{ ls.repeat_reads|intcomma }}</td>
</tr>
{% endfor %}
</tbody>
projects / htsworkflow.git / blobdiff