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remove some useless debugging print statements
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
bustard.py
diff --git
a/htsworkflow/pipelines/bustard.py
b/htsworkflow/pipelines/bustard.py
index 91929ec2b07caf99029c709a415e9648e81f3e55..f1d73eb40fec2ccbe81ccfeb4289285acc0882d5 100644
(file)
--- a/
htsworkflow/pipelines/bustard.py
+++ b/
htsworkflow/pipelines/bustard.py
@@
-170,7
+170,6
@@
def crosstalk_matrix_from_bustard_config(bustard_path, bustard_config_tree):
raise RuntimeError('Expected to find MatrixElements in Bustard BaseCallParameters')
matrix = CrosstalkMatrix(xml=matrix_elements)
raise RuntimeError('Expected to find MatrixElements in Bustard BaseCallParameters')
matrix = CrosstalkMatrix(xml=matrix_elements)
- print "matrix:", matrix
return matrix
class Bustard(object):
return matrix
class Bustard(object):
@@
-273,7
+272,6
@@
def bustard(pathname):
b.user = groups[2]
b.pathname = pathname
bustard_config_filename = os.path.join(pathname, 'config.xml')
b.user = groups[2]
b.pathname = pathname
bustard_config_filename = os.path.join(pathname, 'config.xml')
- print bustard_config_filename
paramfiles = glob(os.path.join(pathname, "params?.xml"))
for paramfile in paramfiles:
phasing = Phasing(paramfile)
paramfiles = glob(os.path.join(pathname, "params?.xml"))
for paramfile in paramfiles:
phasing = Phasing(paramfile)