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Aparently some more recent version of multi eland stopped
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
eland.py
diff --git
a/htsworkflow/pipelines/eland.py
b/htsworkflow/pipelines/eland.py
index 40507e63611136e1f10e300bb6f02b7812b02e23..bdbe5758eb2ef59319d13151d169c91c9aacf04d 100644
(file)
--- a/
htsworkflow/pipelines/eland.py
+++ b/
htsworkflow/pipelines/eland.py
@@
-129,7
+129,7
@@
class ElandLane(object):
else:
# when there are too many hit, eland writes a - where
# it would have put the list of hits
- if fields[3] == '-':
+ if
len(fields) < 4 or
fields[3] == '-':
continue
zero_mismatches = int(groups.group(1))
if zero_mismatches == 1: