add --clean option to runfolder

[htsworkflow.git] / htsworkflow / pipelines / eland.py

diff --git a/htsworkflow/pipelines/eland.py b/htsworkflow/pipelines/eland.py
index 08d3d415c6d4052a8cef291b03cb12caafd1e34e..f9adcd85bbdad0f82cf33672498e4a254b66cfd6 100644 (file)
--- a/htsworkflow/pipelines/eland.py
+++ b/htsworkflow/pipelines/eland.py
@@ -358,7 +358,6 @@ def check_for_eland_file(basedir, pattern, lane_id, end):
        logging.info('found eland file in %s' % (pathname,))
        return pathname
    else:
-       logging.info('no eland file in %s' % (pathname,))
        return None
 
 def eland(gerald_dir, gerald=None, genome_maps=None):
@@ -399,7 +398,9 @@ def eland(gerald_dir, gerald=None, genome_maps=None):
                     if pathname is not None:
                       break
                 else:
+                    logging.debug("No eland file found in %s for lane %s and end %s" %(basedir, lane_id, end))
                     continue
+
                 # yes the lane_id is also being computed in ElandLane._update
                 # I didn't want to clutter up my constructor
                 # but I needed to persist the sample_name/lane_id for