add --clean option to runfolder

[htsworkflow.git] / htsworkflow / pipelines / firecrest.py

diff --git a/htsworkflow/pipelines/firecrest.py b/htsworkflow/pipelines/firecrest.py
index e8d0a2898c0c4d5621732a2fd0abdb5778dcdfd1..fe5d01a68d6a3fce7a42377165c770291c574d42 100644 (file)
--- a/htsworkflow/pipelines/firecrest.py
+++ b/htsworkflow/pipelines/firecrest.py
@@ -102,6 +102,7 @@ def firecrest(pathname):
     Examine the directory at pathname and initalize a Firecrest object
     """
     f = Firecrest()
+    f.pathname = pathname
 
     # parse firecrest directory name
     path, name = os.path.split(pathname)