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Merge branch 'master' into django1.4
[htsworkflow.git]
/
htsworkflow
/
pipelines
/
genomemap.py
diff --git
a/htsworkflow/pipelines/genomemap.py
b/htsworkflow/pipelines/genomemap.py
index 1dd95df86578bd83b75468779f1d08e1c4f3988e..6dfcf68fc235775a8280dd1bc0719e4fd513c7e4 100644
(file)
--- a/
htsworkflow/pipelines/genomemap.py
+++ b/
htsworkflow/pipelines/genomemap.py
@@
-77,13
+77,15
@@
def guess_genome(contig_sizes):
# guess genome names
genomes = {'chr1': {197195432: 'mm9',
# guess genome names
genomes = {'chr1': {197195432: 'mm9',
- 247249719: 'hg1
9
',
+ 247249719: 'hg1
8
',
200994015: 'galGal3',
200994015: 'galGal3',
+ 230208: 'saccer1',
},
'chrI': {230218: 'sacCer3',
15072421: 'elegans190'},
'1': {60348388: 'danRe6'},
},
'chrI': {230218: 'sacCer3',
15072421: 'elegans190'},
'1': {60348388: 'danRe6'},
- 'chr2L': { 23011544: 'dm3' },
+ 'chr2L': { 23011544: 'dm3',
+ 49364326: 'Anopheles_gambiae'},
}
}