run_name = srf.pathname_to_run_name(r.pathname)
seq_cmds = []
if raw_format == 'fastq':
- srf.copy_hiseq_project_fastqs(run_name, r.bustard.pathname, lanes, site, cycle_dir)
+ srf.copy_hiseq_project_fastqs(run_name, r.bustard.pathname, site, cycle_dir)
elif raw_format == 'qseq':
seq_cmds = srf.make_qseq_commands(run_name, r.bustard.pathname, lanes, site, cycle_dir)
elif raw_format == 'srf':