Initial port to python3

[htsworkflow.git] / htsworkflow / pipelines / test / simulate_runfolder.py

diff --git a/htsworkflow/pipelines/test/simulate_runfolder.py b/htsworkflow/pipelines/test/simulate_runfolder.py
index 759a13ee37f2f463771ac2429e64e9be49873031..b94b91d22b7216fc246d08e2d2717317593356ab 100644 (file)
--- a/htsworkflow/pipelines/test/simulate_runfolder.py
+++ b/htsworkflow/pipelines/test/simulate_runfolder.py
@@ -7,8 +7,8 @@ import shutil
 
 TEST_CODE_DIR = os.path.split(__file__)[0]
 TESTDATA_DIR = os.path.join(TEST_CODE_DIR, 'testdata')
-LANE_LIST = range(1,9)
-TILE_LIST = range(1,101)
+LANE_LIST = list(range(1,9))
+TILE_LIST = list(range(1,101))
 HISEQ_TILE_LIST = [1101, 1102, 1103, 1104, 1105, 1106, 1107, 1108,
                    1201, 1202, 1203, 1204, 1205, 1206, 1207, 1208,
                    2101, 2102, 2103, 2104, 2105, 2106, 2107, 2108,
@@ -653,15 +653,15 @@ class DemultiplexedPaths(object):
         return pathname
 
     def dump(self):
-        print ('index seq: {0}'.format(self.index_seq))
+        print(('index seq: {0}'.format(self.index_seq)))
 
-        print ('project dir: {0}'.format(self.project_dir))
-        print ('sample dir: {0}'.format(self.sample_dir))
-        print ('rootname: {0}'.format(self.rootname))
-        print ('path: {0}'.format(
+        print(('project dir: {0}'.format(self.project_dir)))
+        print(('sample dir: {0}'.format(self.sample_dir)))
+        print(('rootname: {0}'.format(self.rootname)))
+        print(('path: {0}'.format(
             os.path.join(self.project_dir,
                          self.sample_dir,
-                         self.rootname+'R1_001.fastq.gz')))
+                         self.rootname+'R1_001.fastq.gz'))))
 
 
 def get_unaligned_sample_fastq_data(flowcell_id, lane, index_seq):
@@ -697,7 +697,7 @@ def print_ls_tree(root):
     """
     for dirpath, dirnames, filenames in os.walk(root):
         for filename in filenames:
-            print os.path.join(dirpath, filename)
+            print(os.path.join(dirpath, filename))
 
 
 class BaseCallInfo(object):