"""
Create simulated solexa/illumina runfolders for testing
"""
+from __future__ import print_function, unicode_literals
+
import gzip
import os
import shutil
return pathname
def dump(self):
- print ('index seq: {0}'.format(self.index_seq))
+ print('index seq: {0}'.format(self.index_seq))
- print ('project dir: {0}'.format(self.project_dir))
- print ('sample dir: {0}'.format(self.sample_dir))
- print ('rootname: {0}'.format(self.rootname))
- print ('path: {0}'.format(
+ print('project dir: {0}'.format(self.project_dir))
+ print('sample dir: {0}'.format(self.sample_dir))
+ print('rootname: {0}'.format(self.rootname))
+ print('path: {0}'.format(
os.path.join(self.project_dir,
self.sample_dir,
self.rootname+'R1_001.fastq.gz')))
"""
for dirpath, dirnames, filenames in os.walk(root):
for filename in filenames:
- print os.path.join(dirpath, filename)
+ print(os.path.join(dirpath, filename))
class BaseCallInfo(object):