Use eland_extended or eland_pair instead of eland for ANALYSIS type

[htsworkflow.git] / htsworkflow / pipelines / test / test_retrive_config.py

diff --git a/htsworkflow/pipelines/test/test_retrive_config.py b/htsworkflow/pipelines/test/test_retrive_config.py
index dd8f30e92d5c91f7d5b9479a2adac5592ca5d3bb..9847ffd4aea53d7a613bfe266cc882584c1c3a7d 100644 (file)
--- a/htsworkflow/pipelines/test/test_retrive_config.py
+++ b/htsworkflow/pipelines/test/test_retrive_config.py
@@ -35,8 +35,10 @@ class RetrieveTestCases(TestCase):
         human = [ line for line in config_lines if re.search('hg18', line) ]
         self.failUnlessEqual(len(human), 1)
         self.failUnlessEqual(human[0], '345678:ELAND_GENOME /tmp/hg18')
-        unknown = [ line for line in config_lines if re.search('Unknown', line) ]
-        self.failUnlessEqual(len(unknown), 2)
+        # we changed the api to force unknown genomes to be sequencing
+        sequencing = [ line for line in config_lines if re.search('sequence_pair', line) ]
+        self.failUnlessEqual(len(sequencing), 2)
+