Updated ipar_100 test case to deal with the using U0/1/2 vs R0/1/2

[htsworkflow.git] / htsworkflow / pipelines / test / test_runfolder_ipar100.py

diff --git a/htsworkflow/pipelines/test/test_runfolder_ipar100.py b/htsworkflow/pipelines/test/test_runfolder_ipar100.py
index 4924a6b59c56895ed1721a75768e170519e942c7..0d546d118063f31119c1d2395529d057f9247eb0 100644 (file)
--- a/htsworkflow/pipelines/test/test_runfolder_ipar100.py
+++ b/htsworkflow/pipelines/test/test_runfolder_ipar100.py
@@ -221,7 +221,12 @@ class RunfolderTests(unittest.TestCase):
             self.failUnlessEqual(lane.lane_id, unicode(i))
             self.failUnlessEqual(len(lane.mapped_reads), 15)
             self.failUnlessEqual(lane.mapped_reads['hg18/chr5.fa'], 4)
-            self.failUnlessEqual(lane.match_codes['U1'], 10)
+            self.failUnlessEqual(lane.match_codes['U0'], 1)
+            self.failUnlessEqual(lane.match_codes['R0'], 2)
+            self.failUnlessEqual(lane.match_codes['U1'], 1)
+            self.failUnlessEqual(lane.match_codes['R1'], 9)
+            self.failUnlessEqual(lane.match_codes['U2'], 0)
+            self.failUnlessEqual(lane.match_codes['R2'], 12)
             self.failUnlessEqual(lane.match_codes['NM'], 1)
             self.failUnlessEqual(lane.match_codes['QC'], 0)