self.failUnlessEqual(b.version, b2.version)
self.failUnlessEqual(b.date, b2.date )
self.failUnlessEqual(b.user, b2.user)
-
+
def test_gerald(self):
# need to update gerald and make tests for it
g = gerald.gerald(self.gerald_dir)
- self.failUnlessEqual(g.version,
- '@(#) Id: GERALD.pl,v 1.171 2008/05/19 17:36:14 mzerara Exp')
+ self.failUnlessEqual(g.version, '1.171')
self.failUnlessEqual(g.date, datetime(2009,2,22,21,15,59))
self.failUnlessEqual(len(g.lanes), len(g.lanes.keys()))
self.failUnlessEqual(len(g.lanes), len(g.lanes.items()))
# make_gerald_config.
# the first None is to offset the genomes list to be 1..9
# instead of pythons default 0..8
- genomes = [None,
- '/g/mm9',
- '/g/mm9',
- '/g/elegans190',
+ genomes = [None,
+ '/g/mm9',
+ '/g/mm9',
+ '/g/elegans190',
'/g/arabidopsis01222004',
- '/g/mm9',
- '/g/mm9',
- '/g/mm9',
+ '/g/mm9',
+ '/g/mm9',
+ '/g/mm9',
'/g/mm9', ]
# test lane specific parameters from gerald config file