os.mkdir(unaligned_dir)
make_unaligned_fastqs_1_12(unaligned_dir, flowcell_id)
make_unaligned_config_1_12(unaligned_dir)
+ make_unaligned_status_1_12(unaligned_dir, flowcell_id)
aligned_dir = os.path.join(runfolder_dir, "Aligned")
os.mkdir(aligned_dir)