update summary.py to extract data from HiSeq runs.

[htsworkflow.git] / htsworkflow / pipelines / test / test_summary.py

diff --git a/htsworkflow/pipelines/test/test_summary.py b/htsworkflow/pipelines/test/test_summary.py
index ab9f96239a63ccd69ce633cd11d36b28e0fe7e4e..af0e90854bf30310b764f8ba75ae4ac5e0200813 100644 (file)
--- a/htsworkflow/pipelines/test/test_summary.py
+++ b/htsworkflow/pipelines/test/test_summary.py
@@ -20,19 +20,19 @@ class SummaryTests(unittest.TestCase):
 
     def test_xml_summary_file(self):
         pathname = os.path.join(TESTDATA_DIR, 'Summary-casava1.7.xml')
-        s = summary.Summary(pathname)
+        s = summary.SummaryGA(pathname)
         self.failUnlessEqual(len(s.lane_results[0]), 8)
         self.failUnlessEqual(s.lane_results[0][1].cluster, (1073893, 146344))
 
     def test_html_summary_file(self):
         pathname = os.path.join(TESTDATA_DIR, 'Summary-ipar130.htm')
-        s = summary.Summary(pathname)
+        s = summary.SummaryGA(pathname)
         self.failUnlessEqual(len(s.lane_results[0]), 8)
         self.failUnlessEqual(s.lane_results[0][1].cluster, (126910, 4300))
 
     def test_hiseq_sample_summary_file(self):
         pathname = os.path.join(TESTDATA_DIR, 'sample_summary_1_12.htm')
-        s = summary.Summary(pathname)
+        s = summary.SummaryGA(pathname)
 
 def suite():
     return unittest.makeSuite(SummaryTests,'test')