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the filename templates were moved from condorfastq to fastqname a while ago
[htsworkflow.git]
/
htsworkflow
/
submission
/
condorfastq.py
diff --git
a/htsworkflow/submission/condorfastq.py
b/htsworkflow/submission/condorfastq.py
index ffbd8e0704356f4798d2dfb3790734bdcc782c9c..b6c22348f581f5148eeaa33cacfafe65f6ebc963 100644
(file)
--- a/
htsworkflow/submission/condorfastq.py
+++ b/
htsworkflow/submission/condorfastq.py
@@
-220,8
+220,6
@@
WHERE {
Also update model with link between illumina result files
and our target fastq file.
"""
Also update model with link between illumina result files
and our target fastq file.
"""
- fastq_paired_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s_r%(read)s.fastq'
- fastq_single_template = '%(lib_id)s_%(flowcell)s_c%(cycle)s_l%(lane)s.fastq'
# find what targets we're missing
needed_targets = {}
for seq in raw_files:
# find what targets we're missing
needed_targets = {}
for seq in raw_files: