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Merge changing lane_number to string and sequence finding code changes
[htsworkflow.git]
/
htsworkflow
/
submission
/
submission.py
diff --git
a/htsworkflow/submission/submission.py
b/htsworkflow/submission/submission.py
index 18fa3b2bc9f487b63915ca02a3c060adbfeedf3b..2b04ff43a05ce6e70d6ccb7b20f7f17d54165699 100644
(file)
--- a/
htsworkflow/submission/submission.py
+++ b/
htsworkflow/submission/submission.py
@@
-126,7
+126,7
@@
class Submission(object):
def link_file_to_classes(self, filename, submissionNode, submission_uri, analysis_dir):
# add file specific information
def link_file_to_classes(self, filename, submissionNode, submission_uri, analysis_dir):
# add file specific information
- fileNode = RDF.Node(RDF.Uri(
submission_uri + '/' + filename
))
+ fileNode = RDF.Node(RDF.Uri(
'file://'+ os.path.abspath(filename)
))
self.model.add_statement(
RDF.Statement(submissionNode,
dafTermOntology['has_file'],
self.model.add_statement(
RDF.Statement(submissionNode,
dafTermOntology['has_file'],