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Progress using rdf model to link fastqs with flowcell/lib metadata.
[htsworkflow.git]
/
htsworkflow
/
submission
/
test
/
test_condorfastq.py
diff --git
a/htsworkflow/submission/test/test_condorfastq.py
b/htsworkflow/submission/test/test_condorfastq.py
index 24d6e4982018dd23ac8e8746d7ade1856ae3d4e7..94df7b60b2f1e7dbca6d5e2fc2ecbacded55f30a 100644
(file)
--- a/
htsworkflow/submission/test/test_condorfastq.py
+++ b/
htsworkflow/submission/test/test_condorfastq.py
@@
-441,7
+441,7
@@
class TestCondorFastq(unittest.TestCase):
def test_find_needed_targets(self):
lib_db = self.extract.find_archive_sequence_files(self.result_map)
def test_find_needed_targets(self):
lib_db = self.extract.find_archive_sequence_files(self.result_map)
- needed_targets = self.extract.
find_missing
_targets(self.result_map,
+ needed_targets = self.extract.
update_fastq
_targets(self.result_map,
lib_db)
self.assertEqual(len(needed_targets), 9)
srf_30221 = needed_targets[
lib_db)
self.assertEqual(len(needed_targets), 9)
srf_30221 = needed_targets[