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mark the example submission rule files as being raw, so the escapes dont get confused
[htsworkflow.git]
/
htsworkflow
/
submission
/
test
/
test_submission.py
diff --git
a/htsworkflow/submission/test/test_submission.py
b/htsworkflow/submission/test/test_submission.py
index 0c4e0870399eb30dbc1702d5fa1912de2a3ab837..d619198a5206a3eef2c7c5737f4c8798ba65a1ce 100644
(file)
--- a/
htsworkflow/submission/test/test_submission.py
+++ b/
htsworkflow/submission/test/test_submission.py
@@
-84,7
+84,7
@@
class TestSubmission(TestCase):
str(RDF.NS('http://localhost/library/')['']))
def test_scan_submission_dirs(self):
str(RDF.NS('http://localhost/library/')['']))
def test_scan_submission_dirs(self):
- turtle = get_turtle_header() + """
+ turtle = get_turtle_header() +
r
"""
@prefix thisView: <http://jumpgate.caltech.edu/wiki/SubmissionsLog/test/view/> .
thisView:Fastq ucscDaf:filename_re ".*[^12]\\.fastq\\.bz2$" ;
a geoSoft:raw ;
@prefix thisView: <http://jumpgate.caltech.edu/wiki/SubmissionsLog/test/view/> .
thisView:Fastq ucscDaf:filename_re ".*[^12]\\.fastq\\.bz2$" ;
a geoSoft:raw ;
@@
-125,7
+125,7
@@
thisView:alignments ucscDaf:filename_re ".*\\.bam$" ;
self.assertEqual(expected, got)
def test_find_best_match(self):
self.assertEqual(expected, got)
def test_find_best_match(self):
- turtle = get_turtle_header() + """
+ turtle = get_turtle_header() +
r
"""
@prefix thisView: <http://jumpgate.caltech.edu/wiki/SubmissionsLog/test/view/> .
thisView:Fastq ucscDaf:filename_re ".*[^12]\\.fastq\\.bz2$" ;
a geoSoft:raw ;
@prefix thisView: <http://jumpgate.caltech.edu/wiki/SubmissionsLog/test/view/> .
thisView:Fastq ucscDaf:filename_re ".*[^12]\\.fastq\\.bz2$" ;
a geoSoft:raw ;