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Initial attempt to start generating trackHubs and manifest files.
[htsworkflow.git]
/
htsworkflow
/
submission
/
trackhub.py
diff --git
a/htsworkflow/submission/trackhub.py
b/htsworkflow/submission/trackhub.py
index e3087fe37b118d83b02ab00c27256625a200823e..87a52582eb5317afb7c1c3be487a354f05f6ee77 100644
(file)
--- a/
htsworkflow/submission/trackhub.py
+++ b/
htsworkflow/submission/trackhub.py
@@
-39,7
+39,10
@@
class TrackHubSubmission(Submission):
context = Context({
'samples': samples,
})
context = Context({
'samples': samples,
})
- print str(soft_template.render(context))
+ return str(soft_template.render(context))
+
+ def make_mainifest(self, result_map):
+ pass
def get_sample_metadata(self, analysis_node):
"""Gather information for filling out sample section of a SOFT file
def get_sample_metadata(self, analysis_node):
"""Gather information for filling out sample section of a SOFT file
@@
-52,4
+55,4
@@
class TrackHubSubmission(Submission):
})
results = self.execute_query(query_template, context)
})
results = self.execute_query(query_template, context)
- return results
\ No newline at end of file
+ return results